Variant report

Variant	rs11875655
Chromosome Location	chr18:44379489-44379490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11872317	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11872376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11872476	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11873793	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11874218	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11874300	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11875032	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11875527	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11875918	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11876752	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11877429	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11877540	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11878114	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11878135	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55752024	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55890037	0.83[AMR][1000 genomes]
rs56030315	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56055727	0.83[AMR][1000 genomes]
rs56333835	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56400973	0.84[EUR][1000 genomes]
rs7229231	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72903212	0.83[AMR][1000 genomes]
rs72903231	0.83[AMR][1000 genomes]
rs72903390	0.96[EUR][1000 genomes]
rs72903401	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72905209	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72905249	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72905251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72905265	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72905274	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72905289	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72905292	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72907114	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72907118	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72907130	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72907134	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72907155	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72907196	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72909171	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72909189	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72909195	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72909201	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72911111	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72911118	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72913063	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72915084	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72917125	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72917151	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72919213	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72919256	0.83[AMR][1000 genomes]
rs72919298	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72921366	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428355	chr18:44160181-44406285	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv9629	chr18:44264693-44757511	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv909592	chr18:44279892-44385150	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv909593	chr18:44279892-44396246	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv909594	chr18:44279892-44400621	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv909595	chr18:44279892-44422661	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv909597	chr18:44291419-44385150	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv909598	chr18:44291419-44422661	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv909599	chr18:44294722-44385150	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv909600	chr18:44294722-44396246	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv909601	chr18:44294722-44400621	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv909602	chr18:44294722-44422661	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv909605	chr18:44316719-44422661	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
14	nsv909606	chr18:44318548-44422661	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
15	nsv909607	chr18:44320836-44422661	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
16	nsv909608	chr18:44335724-44422661	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
17	nsv1056282	chr18:44351115-44388233	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44349600-44381600	Weak transcription	Psoas Muscle	Psoas
2	chr18:44375000-44390400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:44376600-44408000	Weak transcription	GM12878-XiMat	blood
4	chr18:44377600-44380800	Weak transcription	Adipose Nuclei	Adipose
5	chr18:44379000-44380000	Weak transcription	Left Ventricle	heart

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