Variant report

Variant	rs72919256
Chromosome Location	chr18:44536222-44536223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11872350	0.80[AMR][1000 genomes]
rs11872376	0.83[AMR][1000 genomes]
rs11872476	0.83[AMR][1000 genomes]
rs11872528	0.80[AMR][1000 genomes]
rs11873174	0.80[AMR][1000 genomes]
rs11874348	0.80[AMR][1000 genomes]
rs11875258	0.80[AMR][1000 genomes]
rs11875655	0.83[AMR][1000 genomes]
rs11876118	0.80[AMR][1000 genomes]
rs11876752	0.83[AMR][1000 genomes]
rs11877540	0.83[AMR][1000 genomes]
rs11877963	0.80[AMR][1000 genomes]
rs11878050	0.80[AMR][1000 genomes]
rs55717985	0.80[AMR][1000 genomes]
rs55823165	0.80[AMR][1000 genomes]
rs55890037	1.00[AMR][1000 genomes]
rs56055727	1.00[AMR][1000 genomes]
rs56090313	0.80[AMR][1000 genomes]
rs56333835	0.83[AMR][1000 genomes]
rs56388142	0.83[AMR][1000 genomes]
rs72903209	0.83[AMR][1000 genomes]
rs72903212	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72903231	1.00[AMR][1000 genomes]
rs72903232	0.91[AMR][1000 genomes]
rs72903252	0.80[AMR][1000 genomes]
rs72903283	0.80[AMR][1000 genomes]
rs72903284	0.80[AMR][1000 genomes]
rs72903301	0.80[AMR][1000 genomes]
rs72905251	0.83[AMR][1000 genomes]
rs72905404	0.80[AMR][1000 genomes]
rs72905405	0.80[AMR][1000 genomes]
rs72905406	0.80[AMR][1000 genomes]
rs72905408	0.80[AMR][1000 genomes]
rs72905410	0.80[AMR][1000 genomes]
rs72905422	0.80[AMR][1000 genomes]
rs72905430	0.80[AMR][1000 genomes]
rs72905433	0.80[AMR][1000 genomes]
rs72905469	0.80[AMR][1000 genomes]
rs72905471	0.80[AMR][1000 genomes]
rs72905478	0.80[AMR][1000 genomes]
rs72905489	0.80[AMR][1000 genomes]
rs72905490	0.80[AMR][1000 genomes]
rs72905500	0.80[AMR][1000 genomes]
rs72907114	0.83[AMR][1000 genomes]
rs72907155	0.83[AMR][1000 genomes]
rs72907205	0.80[AMR][1000 genomes]
rs72907208	0.80[AMR][1000 genomes]
rs72907211	0.80[AMR][1000 genomes]
rs72907215	0.80[AMR][1000 genomes]
rs72907226	0.80[AMR][1000 genomes]
rs72907232	0.80[AMR][1000 genomes]
rs72907238	0.80[AMR][1000 genomes]
rs72907248	0.80[AMR][1000 genomes]
rs72907250	0.80[AMR][1000 genomes]
rs72907257	0.80[AMR][1000 genomes]
rs72907259	0.80[AMR][1000 genomes]
rs72907266	0.80[AMR][1000 genomes]
rs72907271	0.80[AMR][1000 genomes]
rs72907274	0.80[AMR][1000 genomes]
rs72907278	0.80[AMR][1000 genomes]
rs72909189	0.83[AMR][1000 genomes]
rs72909213	0.80[AMR][1000 genomes]
rs72909219	0.80[AMR][1000 genomes]
rs72909232	0.80[AMR][1000 genomes]
rs72913063	0.83[AMR][1000 genomes]
rs72917125	0.83[AMR][1000 genomes]
rs72919298	0.83[AMR][1000 genomes]
rs72921352	0.90[AMR][1000 genomes]
rs72921363	0.83[AMR][1000 genomes]
rs72921366	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9629	chr18:44264693-44757511	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv833639	chr18:44426363-44552719	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1057629	chr18:44500259-44539223	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1062444	chr18:44503472-44539223	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1062682	chr18:44509052-44539223	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1056744	chr18:44509052-44581752	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv909609	chr18:44513071-44597092	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	esv1818108	chr18:44519357-44549177	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv1825684	chr18:44526351-44549177	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44527400-44538800	Weak transcription	Brain Hippocampus Middle	brain

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