Variant report

Variant	rs11875668
Chromosome Location	chr18:9079763-9079764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9078732..9081972-chr18:9134031..9137501,3	MCF-7	breast:
2	chr18:9079451..9081477-chr18:9081870..9084063,2	K562	blood:
3	chr18:9073896..9076143-chr18:9077487..9080405,2	K562	blood:
4	chr18:9079443..9082082-chr18:9473830..9476061,2	MCF-7	breast:
5	chr18:9079082..9081676-chr18:9082286..9085195,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273335	Chromatin interaction
ENSG00000017797	Chromatin interaction
ENSG00000101745	Chromatin interaction
ENSG00000266053	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1573322	0.86[EUR][1000 genomes]
rs8086519	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv1832073	chr18:9048118-9094498	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9074000-9081600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr18:9074200-9079800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr18:9074200-9079800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr18:9074200-9079800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr18:9074200-9080200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr18:9074200-9080200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr18:9074200-9081600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr18:9074200-9082000	Weak transcription	Adipose Nuclei	Adipose
9	chr18:9074200-9082400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr18:9074200-9083000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr18:9074600-9079800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr18:9074600-9080000	Weak transcription	A549	lung
13	chr18:9075600-9080000	Weak transcription	GM12878-XiMat	blood
14	chr18:9078200-9080200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr18:9078800-9081800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr18:9078800-9083600	Enhancers	Placenta	Placenta
17	chr18:9079400-9079800	Active TSS	Brain Anterior Caudate	brain
18	chr18:9079400-9084800	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr18:9079600-9079800	Active TSS	Brain Cingulate Gyrus	brain
20	chr18:9079600-9079800	Active TSS	Brain Substantia Nigra	brain
21	chr18:9079600-9080000	Active TSS	HepG2	liver
22	chr18:9079600-9080200	Active TSS	Brain Angular Gyrus	brain
23	chr18:9079600-9080400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr18:9079600-9080400	Flanking Active TSS	Brain Hippocampus Middle	brain
25	chr18:9079600-9080600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr18:9079600-9080800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr18:9079600-9081000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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