Variant report

Variant	rs1573322
Chromosome Location	chr18:9070123-9070124
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9068940..9073336-chr18:9073886..9077279,4	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11875668	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs41274302	1.00[AFR][1000 genomes]
rs73388138	0.83[EUR][1000 genomes]
rs8086519	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	esv1832073	chr18:9048118-9094498	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9066200-9077000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:9068400-9070200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr18:9068400-9070400	Enhancers	Primary B cells from cord blood	blood
4	chr18:9068400-9070400	Enhancers	Fetal Muscle Leg	muscle
5	chr18:9068400-9071000	Enhancers	Primary B cells from peripheral blood	blood
6	chr18:9068800-9074000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr18:9068800-9074000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr18:9069000-9073600	Weak transcription	HMEC	breast
9	chr18:9069200-9070200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr18:9069200-9070200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr18:9069200-9070600	Enhancers	Fetal Muscle Trunk	muscle
12	chr18:9069200-9073800	Weak transcription	Adipose Nuclei	Adipose
13	chr18:9069400-9073600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr18:9069400-9073800	Weak transcription	Fetal Intestine Small	intestine
15	chr18:9069600-9070200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr18:9069600-9070200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr18:9069600-9070200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr18:9069600-9070200	Enhancers	Duodenum Mucosa	Duodenum
19	chr18:9069600-9070200	Enhancers	Fetal Heart	heart
20	chr18:9069600-9070200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr18:9069600-9070200	Enhancers	Stomach Smooth Muscle	stomach
22	chr18:9069600-9070200	Enhancers	HSMMtube	muscle
23	chr18:9069600-9070200	Enhancers	NHDF-Ad	bronchial
24	chr18:9069600-9070200	Enhancers	Osteobl	bone
25	chr18:9069600-9070400	Flanking Active TSS	HepG2	liver
26	chr18:9069600-9070800	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr18:9069800-9070200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr18:9069800-9070200	Enhancers	K562	blood
29	chr18:9069800-9073800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr18:9069800-9073800	Weak transcription	Fetal Thymus	thymus
31	chr18:9069800-9074000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr18:9070000-9070200	Enhancers	Primary hematopoietic stem cells	blood
33	chr18:9070000-9070200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr18:9070000-9070200	Enhancers	HSMM	muscle
35	chr18:9070000-9070200	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr18:9070000-9071000	Enhancers	GM12878-XiMat	blood
37	chr18:9070000-9073000	Weak transcription	Liver	Liver
38	chr18:9070000-9073800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr18:9070000-9073800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr18:9070000-9073800	Weak transcription	Colonic Mucosa	Colon
41	chr18:9070000-9073800	Weak transcription	Placenta	Placenta
42	chr18:9070000-9073800	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr18:9070000-9073800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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