Variant report
| Variant | rs11876397 |
|---|---|
| Chromosome Location | chr18:29762739-29762740 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs16962806 | 1.00[AMR][1000 genomes] |
| rs28398333 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28538314 | 1.00[MEX][hapmap] |
| rs28674120 | 1.00[AMR][1000 genomes] |
| rs7232644 | 1.00[AMR][1000 genomes] |
| rs73956838 | 1.00[AMR][1000 genomes] |
| rs8091726 | 1.00[AMR][1000 genomes] |
| rs9748763 | 1.00[AMR][1000 genomes] |
| rs9951329 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs9955488 | 1.00[AMR][1000 genomes] |
| rs9959013 | 1.00[AMR][1000 genomes] |
| rs9967434 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1056007 | chr18:29711974-29899564 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
