Variant report

Variant	rs9951329
Chromosome Location	chr18:29800324-29800325
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11876397	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs16962806	1.00[EUR][1000 genomes]
rs28538314	1.00[MEX][hapmap]
rs28690950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61517062	1.00[EUR][1000 genomes]
rs7232644	1.00[EUR][1000 genomes]
rs73956838	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956839	1.00[EUR][1000 genomes]
rs73956900	1.00[EUR][1000 genomes]
rs73958406	1.00[EUR][1000 genomes]
rs9748763	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9955488	1.00[EUR][1000 genomes]
rs9959013	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9951329	IFNGR2	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links