Variant report

Variant	rs11876495
Chromosome Location	chr18:44787072-44787073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:44778191..44780835-chr18:44785176..44787814,2	K562	blood:
2	chr18:44778191..44780835-chr18:44785049..44787814,3	K562	blood:
3	chr18:44779645..44782742-chr18:44785627..44788634,4	MCF-7	breast:
4	chr18:44624367..44626651-chr18:44785801..44788433,2	K562	blood:
5	chr18:44623688..44626651-chr18:44786266..44788433,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11872350	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11872528	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11873174	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11874348	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11875258	0.83[AMR][1000 genomes]
rs11876118	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11877963	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11878050	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55717985	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55823165	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56090313	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66875245	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67918319	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903252	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72903283	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72903284	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72903301	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72905404	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72905405	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72905406	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72905408	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72905410	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72905422	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72905430	0.83[AMR][1000 genomes]
rs72905433	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72905469	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72905471	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72905478	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72905489	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72905490	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72905500	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907205	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907208	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907211	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907215	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907226	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907232	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907238	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907248	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907250	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907257	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907259	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907266	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907271	0.83[AMR][1000 genomes]
rs72907274	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907278	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72909213	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72909219	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72909232	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72909234	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72909287	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72909295	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72911209	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72914418	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv828226	chr18:44762014-44801196	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1794744	chr18:44774077-44788908	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1797427	chr18:44774077-44788908	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1835264	chr18:44774077-44788908	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1839014	chr18:44774077-44788908	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1819372	chr18:44774673-44799515	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44786000-44787400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:44786200-44787400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
3	chr18:44786400-44789200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr18:44786600-44787400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
5	chr18:44787000-44791000	Bivalent Enhancer	Brain Germinal Matrix	brain

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