Variant report

Variant	rs66875245
Chromosome Location	chr18:44762640-44762641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr18:44762627-44762861	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
RNU6-1131P	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11872350	1.00[ASN][1000 genomes]
rs11872528	1.00[ASN][1000 genomes]
rs11873174	1.00[ASN][1000 genomes]
rs11874348	1.00[ASN][1000 genomes]
rs11876118	1.00[ASN][1000 genomes]
rs11876495	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11877963	1.00[ASN][1000 genomes]
rs11878050	1.00[ASN][1000 genomes]
rs55717985	1.00[ASN][1000 genomes]
rs55823165	1.00[ASN][1000 genomes]
rs56090313	1.00[ASN][1000 genomes]
rs67918319	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903252	1.00[ASN][1000 genomes]
rs72903283	1.00[ASN][1000 genomes]
rs72903284	1.00[ASN][1000 genomes]
rs72903301	1.00[ASN][1000 genomes]
rs72905404	1.00[ASN][1000 genomes]
rs72905405	1.00[ASN][1000 genomes]
rs72905406	1.00[ASN][1000 genomes]
rs72905408	1.00[ASN][1000 genomes]
rs72905410	1.00[ASN][1000 genomes]
rs72905422	1.00[ASN][1000 genomes]
rs72905433	1.00[ASN][1000 genomes]
rs72905469	1.00[ASN][1000 genomes]
rs72905471	1.00[ASN][1000 genomes]
rs72905478	1.00[ASN][1000 genomes]
rs72905489	1.00[ASN][1000 genomes]
rs72905490	1.00[ASN][1000 genomes]
rs72905500	1.00[ASN][1000 genomes]
rs72907205	1.00[ASN][1000 genomes]
rs72907208	1.00[ASN][1000 genomes]
rs72907211	1.00[ASN][1000 genomes]
rs72907215	1.00[ASN][1000 genomes]
rs72907226	1.00[ASN][1000 genomes]
rs72907232	1.00[ASN][1000 genomes]
rs72907238	1.00[ASN][1000 genomes]
rs72907248	1.00[ASN][1000 genomes]
rs72907250	1.00[ASN][1000 genomes]
rs72907257	1.00[ASN][1000 genomes]
rs72907259	1.00[ASN][1000 genomes]
rs72907266	1.00[ASN][1000 genomes]
rs72907274	1.00[ASN][1000 genomes]
rs72907278	1.00[ASN][1000 genomes]
rs72909213	1.00[ASN][1000 genomes]
rs72909219	1.00[ASN][1000 genomes]
rs72909232	1.00[ASN][1000 genomes]
rs72909234	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72909287	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72909295	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72911209	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72914418	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv828226	chr18:44762014-44801196	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44757800-44762800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr18:44761800-44762800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:44762000-44769400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr18:44762600-44763400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr18:44762600-44763600	Enhancers	HUES48 Cell Line	embryonic stem cell

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