Variant report

Variant	rs11877606
Chromosome Location	chr18:14796713-14796714
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11873934	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11875716	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36072341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428006	chr18:14087067-14874733	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
2	nsv916419	chr18:14418522-15165372	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	esv2751771	chr18:14704694-15106727	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv909433	chr18:14711974-14797570	Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2756821	chr18:14741611-14865985	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv2216	chr18:14776359-14841989	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	esv1814681	chr18:14783028-14827894	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv962462	chr18:14783133-14818256	Weak transcription ZNF genes & repeats Enhancers	lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv1810142	chr18:14784020-14815826	Weak transcription ZNF genes & repeats Enhancers	lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv1810873	chr18:14784085-14827632	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv9618	chr18:14784248-14817724	ZNF genes & repeats Weak transcription Enhancers	lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv1808418	chr18:14788052-14826546	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv3437572	chr18:14794252-14805234	Weak transcription Enhancers ZNF genes & repeats	lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14796600-14798200	ZNF genes & repeats	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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