Variant report

Variant	rs11877702
Chromosome Location	chr18:29938043-29938044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29936796..29939619-chr18:29941800..29943870,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10502590	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458860	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963196	0.88[EUR][1000 genomes]
rs16963205	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963218	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963225	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963230	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963239	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963245	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963275	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963279	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421455	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35779665	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485446	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4499310	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55866517	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56945883	1.00[EUR][1000 genomes]
rs57478295	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57613491	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59676860	0.88[EUR][1000 genomes]
rs73956901	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73956902	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958403	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958404	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958405	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958411	1.00[ASN][1000 genomes]
rs902950	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs902951	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs931494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29921600-29938200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:29926800-29951000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr18:29927800-29938200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr18:29930000-29938200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr18:29930000-29938400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr18:29930000-29939600	Weak transcription	Fetal Stomach	stomach
7	chr18:29930000-29947600	Weak transcription	Esophagus	oesophagus
8	chr18:29930200-29945400	Weak transcription	Fetal Intestine Small	intestine
9	chr18:29930200-29945600	Weak transcription	Fetal Intestine Large	intestine
10	chr18:29930200-29953600	Weak transcription	Fetal Muscle Leg	muscle
11	chr18:29931200-29948000	Weak transcription	Brain Angular Gyrus	brain
12	chr18:29931400-29940400	Weak transcription	Brain Substantia Nigra	brain
13	chr18:29931600-29942000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr18:29932600-29943600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr18:29932800-29938200	Weak transcription	Gastric	stomach
16	chr18:29932800-29954000	Weak transcription	Ovary	ovary
17	chr18:29933000-29948000	Weak transcription	Brain Hippocampus Middle	brain
18	chr18:29933600-29939400	Weak transcription	Stomach Mucosa	stomach
19	chr18:29934800-29945600	Weak transcription	Aorta	Aorta
20	chr18:29935600-29939800	Enhancers	Fetal Heart	heart
21	chr18:29936200-29942000	Weak transcription	HSMM	muscle
22	chr18:29936400-29940600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr18:29936400-29942000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr18:29936800-29938200	Weak transcription	Brain Anterior Caudate	brain
25	chr18:29936800-29938400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr18:29936800-29938400	Enhancers	Placenta	Placenta
27	chr18:29936800-29940000	Enhancers	Pancreas	Pancrea
28	chr18:29936800-29942400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr18:29937000-29938200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr18:29937000-29939000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr18:29937000-29939000	Enhancers	Left Ventricle	heart
32	chr18:29937000-29946200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr18:29937200-29938200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr18:29937400-29939000	Enhancers	Right Atrium	heart
35	chr18:29937400-29939600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr18:29937600-29952600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr18:29938000-29938200	Enhancers	Stomach Smooth Muscle	stomach
38	chr18:29938000-29938800	Enhancers	H9 Cell Line	embryonic stem cell
39	chr18:29938000-29941800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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