Variant report

Variant	rs56945883
Chromosome Location	chr18:29944733-29944734
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29942732..29945838-chr18:30048998..30052033,3	MCF-7	breast:
2	chr18:29942791..29945437-chr18:29947108..29948708,2	K562	blood:

Variant related genes	Relation type
ENSG00000141441	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10502588	0.89[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10502589	0.89[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10502590	0.88[EUR][1000 genomes]
rs11877702	1.00[EUR][1000 genomes]
rs1458860	1.00[EUR][1000 genomes]
rs1458861	0.81[AFR][1000 genomes]
rs16963169	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs16963196	0.88[EUR][1000 genomes]
rs16963205	0.88[EUR][1000 genomes]
rs16963218	0.88[EUR][1000 genomes]
rs16963225	0.88[EUR][1000 genomes]
rs16963230	0.88[EUR][1000 genomes]
rs16963239	0.88[EUR][1000 genomes]
rs16963245	0.88[EUR][1000 genomes]
rs16963272	1.00[EUR][1000 genomes]
rs16963275	1.00[EUR][1000 genomes]
rs16963279	1.00[EUR][1000 genomes]
rs2421455	1.00[EUR][1000 genomes]
rs35779665	1.00[EUR][1000 genomes]
rs4485446	1.00[EUR][1000 genomes]
rs4499310	1.00[EUR][1000 genomes]
rs55642668	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs55866517	0.84[EUR][1000 genomes]
rs57478295	1.00[EUR][1000 genomes]
rs57613491	0.88[EUR][1000 genomes]
rs59676860	0.88[EUR][1000 genomes]
rs7228337	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7237501	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7240587	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7240755	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs73956883	0.80[ASN][1000 genomes]
rs73956901	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956902	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73958403	1.00[EUR][1000 genomes]
rs73958404	1.00[EUR][1000 genomes]
rs73958405	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73958407	0.81[AFR][1000 genomes]
rs902950	1.00[EUR][1000 genomes]
rs902951	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs931494	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29926800-29951000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr18:29930000-29947600	Weak transcription	Esophagus	oesophagus
3	chr18:29930200-29945400	Weak transcription	Fetal Intestine Small	intestine
4	chr18:29930200-29945600	Weak transcription	Fetal Intestine Large	intestine
5	chr18:29930200-29953600	Weak transcription	Fetal Muscle Leg	muscle
6	chr18:29931200-29948000	Weak transcription	Brain Angular Gyrus	brain
7	chr18:29932800-29954000	Weak transcription	Ovary	ovary
8	chr18:29933000-29948000	Weak transcription	Brain Hippocampus Middle	brain
9	chr18:29934800-29945600	Weak transcription	Aorta	Aorta
10	chr18:29937000-29946200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr18:29937600-29952600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr18:29938200-29948000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr18:29938400-29945600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr18:29938400-29947600	Weak transcription	Gastric	stomach
15	chr18:29939000-29945600	Weak transcription	Lung	lung
16	chr18:29939000-29947600	Weak transcription	Left Ventricle	heart
17	chr18:29939000-29948000	Weak transcription	Right Atrium	heart
18	chr18:29939000-29951000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr18:29939000-29952800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr18:29939800-29947400	Weak transcription	Fetal Heart	heart
21	chr18:29940600-29947800	Weak transcription	Brain Substantia Nigra	brain
22	chr18:29941400-29946000	Weak transcription	Adipose Nuclei	Adipose
23	chr18:29942200-29945400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr18:29942200-29946000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr18:29942400-29946600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr18:29942600-29946600	Weak transcription	HSMM	muscle
27	chr18:29942800-29945400	Weak transcription	Stomach Mucosa	stomach
28	chr18:29942800-29947800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr18:29942800-29948000	Weak transcription	NHEK	skin
30	chr18:29942800-29948200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr18:29943000-29946000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr18:29943000-29946000	Weak transcription	HMEC	breast
33	chr18:29943000-29946400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr18:29944200-29944800	Enhancers	Pancreas	Pancrea
35	chr18:29944200-29945000	Enhancers	Fetal Brain Male	brain
36	chr18:29944400-29945400	Weak transcription	Liver	Liver

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