Variant report

Variant	rs73958407
Chromosome Location	chr18:29953066-29953067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:29952322..29955283-chr18:29962192..29964133,2	K562	blood:
2	chr18:29915109..29917928-chr18:29952038..29954321,2	MCF-7	breast:
3	chr18:29952934..29954642-chr18:29963321..29966112,2	MCF-7	breast:
4	chr17:74732629..74733362-chr18:29952137..29953134,2	Hela-S3	cervix:
5	chr18:29931862..29933961-chr18:29952330..29954097,2	MCF-7	breast:
6	chr18:29950469..29955579-chr18:30048383..30051595,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161547	Chromatin interaction
ENSG00000092931	Chromatin interaction
ENSG00000141441	Chromatin interaction
ENSG00000207556	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11663076	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11877846	0.85[ASN][1000 genomes]
rs1458861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16963270	0.82[AFR][1000 genomes]
rs17743907	0.85[ASN][1000 genomes]
rs2034968	0.82[AFR][1000 genomes]
rs41527551	0.82[AFR][1000 genomes]
rs56945883	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29930200-29953600	Weak transcription	Fetal Muscle Leg	muscle
2	chr18:29932800-29954000	Weak transcription	Ovary	ovary
3	chr18:29946200-29958200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr18:29946800-29953600	Weak transcription	Colon Smooth Muscle	Colon
5	chr18:29946800-29959000	Weak transcription	Fetal Lung	lung
6	chr18:29947000-29953800	Weak transcription	Fetal Kidney	kidney
7	chr18:29947200-29957200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr18:29948200-29953400	Weak transcription	Gastric	stomach
9	chr18:29948200-29954000	Weak transcription	Aorta	Aorta
10	chr18:29948200-29954200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr18:29948400-29954200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr18:29948600-29953600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr18:29950000-29966200	Weak transcription	Fetal Brain Female	brain
14	chr18:29950800-29956200	Enhancers	Stomach Mucosa	stomach
15	chr18:29951000-29953600	Enhancers	Left Ventricle	heart
16	chr18:29951000-29954400	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr18:29951000-29954600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr18:29951000-29955400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr18:29951000-29956000	Enhancers	Fetal Heart	heart
20	chr18:29951000-29956200	Enhancers	Duodenum Mucosa	Duodenum
21	chr18:29951200-29959200	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr18:29951400-29954200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr18:29951400-29954600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr18:29951400-29954600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr18:29951400-29954600	Enhancers	Adipose Nuclei	Adipose
26	chr18:29951400-29954600	Enhancers	Fetal Intestine Small	intestine
27	chr18:29951400-29954600	Enhancers	HMEC	breast
28	chr18:29951600-29953200	Enhancers	Brain Cingulate Gyrus	brain
29	chr18:29951600-29953200	Enhancers	Fetal Intestine Large	intestine
30	chr18:29951600-29954600	Enhancers	Brain Hippocampus Middle	brain
31	chr18:29951600-29954600	Enhancers	Brain Substantia Nigra	brain
32	chr18:29951800-29953400	Weak transcription	Lung	lung
33	chr18:29951800-29953400	Weak transcription	Small Intestine	intestine
34	chr18:29951800-29953800	Weak transcription	HSMM	muscle
35	chr18:29951800-29954000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr18:29951800-29954600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr18:29951800-29955200	Weak transcription	Psoas Muscle	Psoas
38	chr18:29951800-29961800	Weak transcription	Esophagus	oesophagus
39	chr18:29952000-29953200	Weak transcription	Placenta	Placenta
40	chr18:29952000-29953400	Weak transcription	Colonic Mucosa	Colon
41	chr18:29952000-29954400	Enhancers	Stomach Smooth Muscle	stomach
42	chr18:29952000-29954600	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr18:29952200-29953200	Enhancers	Brain Anterior Caudate	brain
44	chr18:29952200-29953600	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr18:29952400-29953200	Enhancers	Brain Angular Gyrus	brain
46	chr18:29952400-29953600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr18:29952400-29954000	Enhancers	HSMMtube	muscle
48	chr18:29952400-29954400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr18:29952400-29954400	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr18:29952400-29954600	Enhancers	Rectal Mucosa Donor 29	rectum

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