Variant report

Variant	rs11663076
Chromosome Location	chr18:29948616-29948617
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29942791..29945437-chr18:29947108..29948708,2	K562	blood:
2	chr18:29948144..29949941-chr18:30049254..30052197,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141441	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10502588	0.83[YRI][hapmap]
rs10502593	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs10502597	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs11081761	0.85[YRI][hapmap]
rs11661378	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs11664951	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs11665147	0.81[JPT][hapmap];0.81[YRI][hapmap]
rs11665150	0.81[YRI][hapmap]
rs11665190	0.80[YRI][hapmap]
rs11873828	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs11877846	0.81[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs11877881	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs13381344	0.81[JPT][hapmap];0.86[YRI][hapmap]
rs1458861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963169	0.81[YRI][hapmap]
rs16963184	0.84[JPT][hapmap]
rs16963289	0.81[JPT][hapmap];0.81[YRI][hapmap]
rs17743799	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs17743907	0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs17805881	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs17805905	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs17805953	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs17811420	0.83[JPT][hapmap]
rs17811474	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2034968	0.81[JPT][hapmap];0.86[YRI][hapmap]
rs41527551	0.81[JPT][hapmap];0.86[YRI][hapmap]
rs41535045	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7228337	0.83[YRI][hapmap]
rs7237501	0.81[YRI][hapmap]
rs7240587	0.81[YRI][hapmap]
rs7240755	0.83[YRI][hapmap]
rs73958407	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8097263	0.81[JPT][hapmap];0.86[YRI][hapmap]
rs968099	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29926800-29951000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr18:29930200-29953600	Weak transcription	Fetal Muscle Leg	muscle
3	chr18:29932800-29954000	Weak transcription	Ovary	ovary
4	chr18:29937600-29952600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:29939000-29951000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr18:29939000-29952800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:29945400-29948800	Enhancers	Fetal Intestine Small	intestine
8	chr18:29945400-29948800	Enhancers	Stomach Mucosa	stomach
9	chr18:29946000-29948800	Enhancers	HMEC	breast
10	chr18:29946000-29949000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr18:29946000-29949200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr18:29946200-29951000	Weak transcription	Lung	lung
13	chr18:29946200-29958200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr18:29946800-29951000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr18:29946800-29953600	Weak transcription	Colon Smooth Muscle	Colon
16	chr18:29946800-29959000	Weak transcription	Fetal Lung	lung
17	chr18:29947000-29951400	Weak transcription	Adipose Nuclei	Adipose
18	chr18:29947000-29951400	Weak transcription	HSMM	muscle
19	chr18:29947000-29952400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr18:29947000-29953800	Weak transcription	Fetal Kidney	kidney
21	chr18:29947200-29957200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr18:29947400-29951200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr18:29947600-29951800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr18:29947800-29948800	Enhancers	Fetal Brain Male	brain
25	chr18:29947800-29949200	Enhancers	Brain Substantia Nigra	brain
26	chr18:29947800-29949200	Enhancers	Hela-S3	cervix
27	chr18:29947800-29951000	Weak transcription	Psoas Muscle	Psoas
28	chr18:29947800-29951200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr18:29948000-29948800	Enhancers	Brain Anterior Caudate	brain
30	chr18:29948000-29948800	Enhancers	Brain Cingulate Gyrus	brain
31	chr18:29948000-29948800	Enhancers	NHEK	skin
32	chr18:29948000-29949200	Enhancers	Brain Angular Gyrus	brain
33	chr18:29948000-29949400	Enhancers	Brain Hippocampus Middle	brain
34	chr18:29948000-29950000	Enhancers	Fetal Heart	heart
35	chr18:29948200-29948800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr18:29948200-29949200	Enhancers	Liver	Liver
37	chr18:29948200-29949800	Weak transcription	Esophagus	oesophagus
38	chr18:29948200-29951400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr18:29948200-29951600	Weak transcription	Right Ventricle	heart
40	chr18:29948200-29953400	Weak transcription	Gastric	stomach
41	chr18:29948200-29954000	Weak transcription	Aorta	Aorta
42	chr18:29948200-29954200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr18:29948400-29950000	Enhancers	Fetal Brain Female	brain
44	chr18:29948400-29951000	Weak transcription	Placenta	Placenta
45	chr18:29948400-29951000	Weak transcription	Left Ventricle	heart
46	chr18:29948400-29951000	Weak transcription	Pancreas	Pancrea
47	chr18:29948400-29951000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr18:29948400-29952400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr18:29948400-29952600	Weak transcription	Right Atrium	heart
50	chr18:29948400-29954200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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