Variant report

Variant	rs16963184
Chromosome Location	chr18:29925386-29925387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10502593	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10502597	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10502598	1.00[CEU][hapmap]
rs10502599	1.00[CEU][hapmap]
rs11660076	1.00[CEU][hapmap]
rs11661284	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11661378	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11661757	0.90[ASN][1000 genomes]
rs11661767	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11663076	0.84[JPT][hapmap]
rs11664951	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11665544	1.00[CEU][hapmap]
rs11873828	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11873865	0.82[JPT][hapmap]
rs11877846	0.92[JPT][hapmap];0.82[EUR][1000 genomes]
rs11877881	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12052010	1.00[CEU][hapmap]
rs1380086	1.00[CEU][hapmap]
rs1458861	0.84[JPT][hapmap]
rs1689031	0.90[ASN][1000 genomes]
rs16962924	1.00[CEU][hapmap]
rs16962941	1.00[CEU][hapmap]
rs16962953	1.00[CEU][hapmap]
rs16962965	1.00[CEU][hapmap]
rs16962971	1.00[CEU][hapmap]
rs16962974	1.00[CEU][hapmap]
rs16962977	1.00[CEU][hapmap]
rs16963129	1.00[CEU][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes]
rs17743799	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17743907	1.00[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs17744164	1.00[CEU][hapmap]
rs17805881	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17805905	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17805953	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17811420	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17811474	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17811780	1.00[CEU][hapmap]
rs3859366	1.00[CEU][hapmap]
rs41535045	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4462681	1.00[CEU][hapmap]
rs60694040	0.81[EUR][1000 genomes]
rs7236302	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7237059	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7241450	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7243963	1.00[CEU][hapmap]
rs8086990	1.00[CEU][hapmap]
rs9953127	1.00[CEU][hapmap]
rs9960751	1.00[CEU][hapmap]
rs9962307	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29897200-29926400	Weak transcription	Fetal Stomach	stomach
2	chr18:29904400-29930000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr18:29910600-29929800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr18:29913400-29926600	Weak transcription	Aorta	Aorta
5	chr18:29915600-29929600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr18:29919400-29926600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr18:29920000-29930200	Weak transcription	Stomach Mucosa	stomach
8	chr18:29921600-29938200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr18:29922600-29929600	Weak transcription	Fetal Intestine Small	intestine
10	chr18:29922600-29929800	Weak transcription	Fetal Heart	heart
11	chr18:29923000-29926400	Weak transcription	Colon Smooth Muscle	Colon
12	chr18:29923800-29926200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr18:29924000-29926800	Weak transcription	Fetal Brain Female	brain
14	chr18:29924000-29929800	Weak transcription	Esophagus	oesophagus
15	chr18:29924000-29930800	Enhancers	Brain Anterior Caudate	brain
16	chr18:29924200-29925600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr18:29924200-29925600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr18:29924200-29925600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr18:29924200-29925600	Weak transcription	Brain Substantia Nigra	brain
20	chr18:29924200-29926600	Weak transcription	Right Atrium	heart
21	chr18:29924200-29926800	Weak transcription	Ovary	ovary
22	chr18:29924200-29926800	Weak transcription	Psoas Muscle	Psoas
23	chr18:29924200-29929800	Weak transcription	Fetal Muscle Leg	muscle
24	chr18:29924200-29936800	Weak transcription	Pancreas	Pancrea
25	chr18:29924200-29937000	Weak transcription	Left Ventricle	heart
26	chr18:29924400-29925400	Weak transcription	Brain Hippocampus Middle	brain
27	chr18:29924400-29926400	Weak transcription	Adipose Nuclei	Adipose
28	chr18:29924400-29929600	Weak transcription	Liver	Liver
29	chr18:29924400-29929800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr18:29925000-29927000	Enhancers	Brain Angular Gyrus	brain
31	chr18:29925000-29930600	Enhancers	Brain Cingulate Gyrus	brain

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