Variant report

Variant	rs12052010
Chromosome Location	chr18:30005741-30005742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30001420..30003838-chr18:30004077..30007030,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10502593	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10502597	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10502598	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10502599	1.00[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11081762	0.80[ASN][1000 genomes]
rs11660076	1.00[CEU][hapmap]
rs11661284	0.86[EUR][1000 genomes]
rs11661378	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11661767	0.86[EUR][1000 genomes]
rs11664951	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11665544	1.00[CEU][hapmap]
rs11873828	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11877881	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1380086	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16962924	1.00[CEU][hapmap]
rs16962941	1.00[CEU][hapmap]
rs16962953	1.00[CEU][hapmap]
rs16962965	1.00[CEU][hapmap]
rs16962971	1.00[CEU][hapmap]
rs16962974	1.00[CEU][hapmap]
rs16962977	1.00[CEU][hapmap]
rs16963129	1.00[CEU][hapmap]
rs16963184	1.00[CEU][hapmap]
rs17743799	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17743907	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17744022	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs17744057	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs17744164	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17744182	0.91[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17805881	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17805905	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17805953	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17811420	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17811474	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17811780	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41535045	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4462681	1.00[CEU][hapmap]
rs55641647	0.96[ASN][1000 genomes]
rs7229026	0.82[JPT][hapmap]
rs7236302	0.86[EUR][1000 genomes]
rs7237059	0.86[EUR][1000 genomes]
rs7241450	0.86[EUR][1000 genomes]
rs7243963	1.00[CEU][hapmap]
rs72933552	0.94[ASN][1000 genomes]
rs8086990	1.00[CEU][hapmap]
rs9953127	1.00[CEU][hapmap]
rs9960751	1.00[CEU][hapmap]
rs9962307	1.00[CEU][hapmap]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29998800-30005800	Enhancers	Brain Cingulate Gyrus	brain
2	chr18:29998800-30005800	Enhancers	Brain Substantia Nigra	brain
3	chr18:29999200-30005800	Enhancers	Brain Anterior Caudate	brain
4	chr18:29999400-30007400	Weak transcription	Fetal Intestine Small	intestine
5	chr18:29999600-30007400	Weak transcription	Right Ventricle	heart
6	chr18:30000800-30005800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr18:30001400-30018400	Weak transcription	Esophagus	oesophagus
8	chr18:30002000-30008600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr18:30002200-30006200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr18:30002400-30006600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr18:30002400-30007400	Weak transcription	Left Ventricle	heart
12	chr18:30002400-30014800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr18:30002400-30017200	Weak transcription	Right Atrium	heart
14	chr18:30002400-30018200	Weak transcription	Psoas Muscle	Psoas
15	chr18:30003800-30005800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr18:30004200-30007400	Weak transcription	Aorta	Aorta
17	chr18:30004400-30005800	Enhancers	Liver	Liver
18	chr18:30004400-30005800	Enhancers	Rectal Smooth Muscle	rectum
19	chr18:30004600-30005800	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr18:30004600-30008600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr18:30004800-30005800	Enhancers	Brain Angular Gyrus	brain
22	chr18:30004800-30005800	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr18:30004800-30005800	Enhancers	Osteobl	bone
24	chr18:30004800-30006000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr18:30004800-30006200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr18:30004800-30006800	Enhancers	NH-A	brain
27	chr18:30004800-30008400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr18:30005200-30006000	Enhancers	Stomach Smooth Muscle	stomach
29	chr18:30005200-30018200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr18:30005400-30005800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr18:30005400-30005800	Flanking Active TSS	Fetal Heart	heart
32	chr18:30005400-30005800	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr18:30005400-30005800	Enhancers	Fetal Lung	lung
34	chr18:30005400-30005800	Flanking Active TSS	A549	lung
35	chr18:30005400-30006000	Enhancers	Hela-S3	cervix
36	chr18:30005400-30006000	Enhancers	NHEK	skin
37	chr18:30005400-30006200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr18:30005400-30006400	Enhancers	Small Intestine	intestine
39	chr18:30005400-30007400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr18:30005400-30007400	Enhancers	HSMM	muscle
41	chr18:30005400-30007600	Enhancers	Stomach Mucosa	stomach
42	chr18:30005400-30007800	Enhancers	HepG2	liver
43	chr18:30005600-30005800	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr18:30005600-30006000	Weak transcription	Ovary	ovary
45	chr18:30005600-30008200	Weak transcription	Fetal Brain Male	brain
46	chr18:30005600-30008200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr18:30005600-30009000	Weak transcription	Brain Hippocampus Middle	brain
48	chr18:30005600-30009400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr18:30005600-30009600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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