Variant report

Variant	rs17811780
Chromosome Location	chr18:30030309-30030310
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10468834	0.81[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs10502593	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10502597	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10502598	1.00[CEU][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10502599	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11660076	1.00[CEU][hapmap]
rs11661284	0.86[EUR][1000 genomes]
rs11661378	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11661767	0.86[EUR][1000 genomes]
rs11664951	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11665544	1.00[CEU][hapmap]
rs11873828	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11877846	1.00[TSI][hapmap]
rs11877881	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs12052010	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1350551	0.81[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs1380086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962924	1.00[CEU][hapmap]
rs16962941	1.00[CEU][hapmap]
rs16962953	1.00[CEU][hapmap]
rs16962965	1.00[CEU][hapmap]
rs16962971	1.00[CEU][hapmap]
rs16962974	1.00[CEU][hapmap]
rs16962977	1.00[CEU][hapmap]
rs16963129	1.00[CEU][hapmap]
rs16963184	1.00[CEU][hapmap]
rs17743799	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17743907	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17744022	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs17744057	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs17744064	0.81[ASN][1000 genomes]
rs17744164	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap]
rs17744182	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17805881	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17805905	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17805953	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17811420	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17811474	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17811714	0.81[ASN][1000 genomes]
rs17811798	0.81[ASN][1000 genomes]
rs1863605	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs41535045	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs4462681	1.00[CEU][hapmap]
rs55641647	0.83[ASN][1000 genomes]
rs55941037	0.81[ASN][1000 genomes]
rs61311884	0.81[ASN][1000 genomes]
rs7236302	0.86[EUR][1000 genomes]
rs7237059	0.86[EUR][1000 genomes]
rs7241450	0.86[EUR][1000 genomes]
rs7243963	1.00[CEU][hapmap]
rs72933552	0.84[ASN][1000 genomes]
rs729692	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs729693	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs73954814	0.81[ASN][1000 genomes]
rs8086990	1.00[CEU][hapmap]
rs9807749	0.81[ASN][1000 genomes]
rs9953127	1.00[CEU][hapmap]
rs9960751	1.00[CEU][hapmap]
rs9962307	1.00[CEU][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30020000-30032000	Weak transcription	Gastric	stomach
2	chr18:30020800-30030600	Weak transcription	Stomach Mucosa	stomach
3	chr18:30022800-30030600	Weak transcription	Psoas Muscle	Psoas
4	chr18:30022800-30035400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr18:30023400-30033000	Enhancers	Fetal Heart	heart
6	chr18:30024000-30035200	Weak transcription	Fetal Brain Female	brain
7	chr18:30024200-30044800	Weak transcription	Right Ventricle	heart
8	chr18:30025000-30041200	Weak transcription	Left Ventricle	heart
9	chr18:30025200-30030600	Weak transcription	Pancreas	Pancrea
10	chr18:30027000-30032200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr18:30027000-30033600	Weak transcription	Fetal Brain Male	brain
12	chr18:30027200-30034000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr18:30027200-30045400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr18:30027800-30030400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr18:30027800-30032400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr18:30028400-30031800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr18:30028800-30030600	Weak transcription	Small Intestine	intestine
18	chr18:30028800-30030800	Enhancers	Fetal Intestine Small	intestine
19	chr18:30029200-30030400	Weak transcription	Brain Hippocampus Middle	brain
20	chr18:30029200-30030600	Weak transcription	Brain Substantia Nigra	brain
21	chr18:30029800-30030800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr18:30029800-30032800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr18:30029800-30037000	Enhancers	Brain Angular Gyrus	brain
24	chr18:30030000-30030400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
25	chr18:30030000-30030800	Flanking Active TSS	Liver	Liver
26	chr18:30030000-30031000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr18:30030000-30032200	Weak transcription	Fetal Intestine Large	intestine
28	chr18:30030200-30030800	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links