Variant report

Variant	rs17744164
Chromosome Location	chr18:30030412-30030413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10438935	0.84[ASN][1000 genomes]
rs10468833	0.84[ASN][1000 genomes]
rs10468834	0.89[CHB][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10468904	0.87[ASN][1000 genomes]
rs10502593	1.00[CEU][hapmap]
rs10502597	1.00[CEU][hapmap]
rs10502598	1.00[CEU][hapmap]
rs10502599	1.00[CEU][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap]
rs10775451	0.86[ASN][1000 genomes]
rs10853421	0.84[ASN][1000 genomes]
rs11081763	0.84[ASN][1000 genomes]
rs11081764	0.84[ASN][1000 genomes]
rs11081765	0.84[ASN][1000 genomes]
rs11660076	1.00[CEU][hapmap]
rs11661378	1.00[CEU][hapmap]
rs11662168	0.94[CHB][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11664951	1.00[CEU][hapmap]
rs11665544	1.00[CEU][hapmap]
rs11873828	1.00[CEU][hapmap]
rs11874614	0.87[ASN][1000 genomes]
rs11877881	1.00[CEU][hapmap]
rs12052010	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12604457	0.94[CHB][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13380944	0.88[CHB][hapmap];0.98[ASN][1000 genomes]
rs13380952	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13380968	0.85[ASN][1000 genomes]
rs1350551	0.89[CHB][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1380085	0.88[CHB][hapmap];0.94[ASN][1000 genomes]
rs1380086	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs1458858	0.84[ASN][1000 genomes]
rs1458865	0.87[ASN][1000 genomes]
rs16962924	1.00[CEU][hapmap]
rs16962941	1.00[CEU][hapmap]
rs16962953	1.00[CEU][hapmap]
rs16962965	1.00[CEU][hapmap]
rs16962971	1.00[CEU][hapmap]
rs16962974	1.00[CEU][hapmap]
rs16962977	1.00[CEU][hapmap]
rs16963129	1.00[CEU][hapmap]
rs16963184	1.00[CEU][hapmap]
rs16963381	0.88[CHB][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17743799	1.00[CEU][hapmap]
rs17743907	1.00[CEU][hapmap]
rs17744051	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17744064	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17744182	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs17805881	1.00[CEU][hapmap]
rs17805905	1.00[CEU][hapmap]
rs17805953	1.00[CEU][hapmap]
rs17811420	1.00[CEU][hapmap]
rs17811474	1.00[CEU][hapmap]
rs17811666	0.89[ASN][1000 genomes]
rs17811690	0.94[CHB][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17811714	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17811780	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap]
rs17811798	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1863605	0.89[CHB][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2052757	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2055060	0.85[ASN][1000 genomes]
rs41535045	1.00[CEU][hapmap]
rs4462681	1.00[CEU][hapmap]
rs55941037	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57978863	0.81[ASN][1000 genomes]
rs60928334	0.84[ASN][1000 genomes]
rs61311884	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6506968	0.84[ASN][1000 genomes]
rs7228553	0.87[ASN][1000 genomes]
rs7229026	0.84[ASN][1000 genomes]
rs7243086	0.84[ASN][1000 genomes]
rs7243481	0.84[ASN][1000 genomes]
rs7243539	0.87[ASN][1000 genomes]
rs7243963	1.00[CEU][hapmap]
rs7245123	0.85[ASN][1000 genomes]
rs72933532	0.82[ASN][1000 genomes]
rs72933545	0.84[ASN][1000 genomes]
rs729691	0.89[CHB][hapmap];0.94[ASN][1000 genomes]
rs729692	0.89[CHB][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs729693	0.89[CHB][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7359734	0.84[ASN][1000 genomes]
rs73954814	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8083848	0.88[CHB][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8086990	1.00[CEU][hapmap]
rs8087581	0.94[CHB][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8087781	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8091089	0.86[ASN][1000 genomes]
rs8093474	0.81[ASN][1000 genomes]
rs8093807	0.84[ASN][1000 genomes]
rs8094711	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8094914	0.89[ASN][1000 genomes]
rs8096329	0.84[ASN][1000 genomes]
rs968177	0.82[ASN][1000 genomes]
rs968178	0.82[ASN][1000 genomes]
rs9807749	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs982521	0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9953127	1.00[CEU][hapmap]
rs9960751	1.00[CEU][hapmap]
rs9962307	1.00[CEU][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30020000-30032000	Weak transcription	Gastric	stomach
2	chr18:30020800-30030600	Weak transcription	Stomach Mucosa	stomach
3	chr18:30022800-30030600	Weak transcription	Psoas Muscle	Psoas
4	chr18:30022800-30035400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr18:30023400-30033000	Enhancers	Fetal Heart	heart
6	chr18:30024000-30035200	Weak transcription	Fetal Brain Female	brain
7	chr18:30024200-30044800	Weak transcription	Right Ventricle	heart
8	chr18:30025000-30041200	Weak transcription	Left Ventricle	heart
9	chr18:30025200-30030600	Weak transcription	Pancreas	Pancrea
10	chr18:30027000-30032200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr18:30027000-30033600	Weak transcription	Fetal Brain Male	brain
12	chr18:30027200-30034000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr18:30027200-30045400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr18:30027800-30032400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr18:30028400-30031800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr18:30028800-30030600	Weak transcription	Small Intestine	intestine
17	chr18:30028800-30030800	Enhancers	Fetal Intestine Small	intestine
18	chr18:30029200-30030600	Weak transcription	Brain Substantia Nigra	brain
19	chr18:30029800-30030800	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr18:30029800-30032800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr18:30029800-30037000	Enhancers	Brain Angular Gyrus	brain
22	chr18:30030000-30030800	Flanking Active TSS	Liver	Liver
23	chr18:30030000-30031000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr18:30030000-30032200	Weak transcription	Fetal Intestine Large	intestine
25	chr18:30030200-30030800	Enhancers	Brain Anterior Caudate	brain
26	chr18:30030400-30030800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr18:30030400-30031600	Enhancers	Brain Hippocampus Middle	brain
28	chr18:30030400-30037400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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