Variant report

Variant	rs1458858
Chromosome Location	chr18:30005527-30005528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30001420..30003838-chr18:30004077..30007030,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10438935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10468833	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10468834	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs10468904	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10775451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10853421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11081761	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11081762	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11081763	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11081764	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11081765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11662168	0.84[ASN][1000 genomes]
rs11665147	0.87[EUR][1000 genomes]
rs11665150	0.87[EUR][1000 genomes]
rs11665190	0.87[EUR][1000 genomes]
rs11874614	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12604457	0.84[ASN][1000 genomes]
rs13380944	0.82[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs13380968	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13381344	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs1350551	0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs1380085	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs1458865	0.86[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16963270	0.84[EUR][1000 genomes]
rs16963287	0.80[YRI][hapmap]
rs16963289	0.87[EUR][1000 genomes]
rs16963381	0.93[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17744022	0.83[JPT][hapmap]
rs17744051	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17744064	0.87[ASN][1000 genomes]
rs17744164	0.84[ASN][1000 genomes]
rs17811666	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17811690	0.84[ASN][1000 genomes]
rs17811714	0.87[ASN][1000 genomes]
rs17811798	0.87[ASN][1000 genomes]
rs1863605	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs1964517	0.83[EUR][1000 genomes]
rs2034968	0.83[EUR][1000 genomes]
rs2052757	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2055060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2421462	0.85[CEU][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs41527551	0.83[EUR][1000 genomes]
rs55941037	0.87[ASN][1000 genomes]
rs56808255	0.88[EUR][1000 genomes]
rs57978863	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60451418	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60928334	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61311884	0.87[ASN][1000 genomes]
rs6506968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7228553	0.93[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7229026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7243086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7243481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7243539	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7245123	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72933532	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72933545	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729691	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs729692	0.82[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs729693	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs7359734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73954814	0.87[ASN][1000 genomes]
rs8083848	0.93[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8087581	0.84[ASN][1000 genomes]
rs8087781	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8089997	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs8091089	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8093474	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8093807	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8094711	0.84[ASN][1000 genomes]
rs8094914	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8096329	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8097263	0.83[EUR][1000 genomes]
rs968177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs968178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9807749	0.87[ASN][1000 genomes]
rs982521	0.93[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29998800-30005800	Enhancers	Brain Cingulate Gyrus	brain
2	chr18:29998800-30005800	Enhancers	Brain Substantia Nigra	brain
3	chr18:29999000-30005600	Enhancers	Brain Hippocampus Middle	brain
4	chr18:29999200-30005800	Enhancers	Brain Anterior Caudate	brain
5	chr18:29999400-30007400	Weak transcription	Fetal Intestine Small	intestine
6	chr18:29999600-30007400	Weak transcription	Right Ventricle	heart
7	chr18:30000400-30005600	Enhancers	Fetal Brain Male	brain
8	chr18:30000800-30005800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr18:30001400-30018400	Weak transcription	Esophagus	oesophagus
10	chr18:30002000-30008600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr18:30002200-30006200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr18:30002400-30006600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr18:30002400-30007400	Weak transcription	Left Ventricle	heart
14	chr18:30002400-30014800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr18:30002400-30017200	Weak transcription	Right Atrium	heart
16	chr18:30002400-30018200	Weak transcription	Psoas Muscle	Psoas
17	chr18:30003800-30005800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr18:30004200-30007400	Weak transcription	Aorta	Aorta
19	chr18:30004400-30005600	Enhancers	Colon Smooth Muscle	Colon
20	chr18:30004400-30005600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr18:30004400-30005800	Enhancers	Liver	Liver
22	chr18:30004400-30005800	Enhancers	Rectal Smooth Muscle	rectum
23	chr18:30004600-30005600	Enhancers	Fetal Brain Female	brain
24	chr18:30004600-30005800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr18:30004600-30008600	Enhancers	Muscle Satellite Cultured Cells	--
26	chr18:30004800-30005600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr18:30004800-30005600	Enhancers	Fetal Stomach	stomach
28	chr18:30004800-30005800	Enhancers	Brain Angular Gyrus	brain
29	chr18:30004800-30005800	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr18:30004800-30005800	Enhancers	Osteobl	bone
31	chr18:30004800-30006000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr18:30004800-30006200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr18:30004800-30006800	Enhancers	NH-A	brain
34	chr18:30004800-30008400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr18:30005000-30005600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr18:30005000-30005600	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr18:30005200-30006000	Enhancers	Stomach Smooth Muscle	stomach
38	chr18:30005200-30018200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr18:30005400-30005600	Enhancers	Ovary	ovary
40	chr18:30005400-30005800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr18:30005400-30005800	Flanking Active TSS	Fetal Heart	heart
42	chr18:30005400-30005800	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr18:30005400-30005800	Enhancers	Fetal Lung	lung
44	chr18:30005400-30005800	Flanking Active TSS	A549	lung
45	chr18:30005400-30006000	Enhancers	Hela-S3	cervix
46	chr18:30005400-30006000	Enhancers	NHEK	skin
47	chr18:30005400-30006200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr18:30005400-30006400	Enhancers	Small Intestine	intestine
49	chr18:30005400-30007400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr18:30005400-30007400	Enhancers	HSMM	muscle

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