Variant report

Variant	rs13381344
Chromosome Location	chr18:29973731-29973732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10048362	0.91[ASN][1000 genomes]
rs1037753	0.86[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs10438935	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs10468833	0.90[EUR][1000 genomes]
rs10468904	0.85[CEU][hapmap];0.93[GIH][hapmap];0.82[EUR][1000 genomes]
rs10502596	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs10775451	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs10853421	0.92[CEU][hapmap];0.93[GIH][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs11081761	0.87[ASW][hapmap];0.88[CEU][hapmap];0.93[GIH][hapmap];0.95[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11081762	0.81[EUR][1000 genomes]
rs11081763	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs11081764	0.90[EUR][1000 genomes]
rs11081765	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs11504782	0.81[ASN][1000 genomes]
rs11663076	0.81[JPT][hapmap];0.86[YRI][hapmap]
rs11665147	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11665150	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11665190	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11873325	0.86[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs11874614	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs13380944	0.93[GIH][hapmap]
rs13380968	0.90[EUR][1000 genomes]
rs13381088	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs1458858	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs1458861	0.81[JPT][hapmap];0.86[YRI][hapmap]
rs1458865	0.93[GIH][hapmap]
rs16963270	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16963285	0.86[GIH][hapmap];0.83[TSI][hapmap]
rs16963287	0.93[CHB][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16963289	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16963326	0.86[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs16963334	0.86[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs16963381	0.85[CEU][hapmap];0.96[GIH][hapmap]
rs17744051	0.85[CEU][hapmap];0.93[GIH][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs17811666	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs1964517	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2034968	0.93[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2052757	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2055060	0.92[CEU][hapmap];0.93[GIH][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs2421462	0.92[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28500590	0.90[ASN][1000 genomes]
rs3786308	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs3786310	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs3826611	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs41527551	0.93[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4561543	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4597393	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56808255	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57978863	0.92[EUR][1000 genomes]
rs59211646	0.90[ASN][1000 genomes]
rs60451418	0.95[EUR][1000 genomes]
rs60928334	0.90[EUR][1000 genomes]
rs6506968	0.92[CEU][hapmap];0.93[GIH][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs7226639	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs7227973	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7228553	0.85[CEU][hapmap];0.93[GIH][hapmap];0.82[EUR][1000 genomes]
rs7229026	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs7233422	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7243086	0.90[EUR][1000 genomes]
rs7243481	0.90[EUR][1000 genomes]
rs7243539	0.80[EUR][1000 genomes]
rs7243964	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7245123	0.85[CEU][hapmap];0.93[GIH][hapmap]
rs72933532	0.90[EUR][1000 genomes]
rs72933545	0.90[EUR][1000 genomes]
rs7359734	0.92[CEU][hapmap];0.93[GIH][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs73958414	0.91[ASN][1000 genomes]
rs73958415	0.90[ASN][1000 genomes]
rs8083848	0.85[CEU][hapmap];0.96[GIH][hapmap];0.83[TSI][hapmap]
rs8087781	0.81[EUR][1000 genomes]
rs8091089	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs8093474	0.81[EUR][1000 genomes]
rs8093807	0.90[EUR][1000 genomes]
rs8094914	0.85[CEU][hapmap];0.93[YRI][hapmap];0.80[EUR][1000 genomes]
rs8096329	0.90[EUR][1000 genomes]
rs8097263	1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs968099	1.00[JPT][hapmap];0.83[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs968177	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs968178	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs982521	0.85[CEU][hapmap]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29954000-29974000	Weak transcription	HSMMtube	muscle
2	chr18:29954200-29974400	Weak transcription	Fetal Muscle Leg	muscle
3	chr18:29954600-29974200	Weak transcription	Fetal Intestine Small	intestine
4	chr18:29959200-29975400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr18:29962800-29974000	Weak transcription	Left Ventricle	heart
6	chr18:29963600-29976200	Weak transcription	Aorta	Aorta
7	chr18:29963600-29999200	Weak transcription	Fetal Kidney	kidney
8	chr18:29964200-29974000	Weak transcription	Ovary	ovary
9	chr18:29964800-29985400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr18:29965800-29974000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr18:29966400-29974000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr18:29966600-29975000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr18:29966600-29981400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr18:29966800-29985400	Weak transcription	Right Ventricle	heart
15	chr18:29967000-29986600	Weak transcription	Brain Angular Gyrus	brain
16	chr18:29967400-29974600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr18:29970200-29974000	Weak transcription	Small Intestine	intestine
18	chr18:29971800-29974200	Weak transcription	Fetal Intestine Large	intestine
19	chr18:29971800-29974800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr18:29972400-29974800	Weak transcription	Brain Anterior Caudate	brain
21	chr18:29973000-29974000	Weak transcription	Pancreas	Pancrea
22	chr18:29973000-29974800	Weak transcription	Brain Substantia Nigra	brain
23	chr18:29973200-29973800	Enhancers	Liver	Liver
24	chr18:29973200-29973800	Enhancers	Fetal Heart	heart
25	chr18:29973200-29974000	Enhancers	Stomach Mucosa	stomach

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