Variant report

Variant	rs7227973
Chromosome Location	chr18:29922937-29922938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10502587	0.84[ASN][1000 genomes]
rs11081761	0.81[EUR][1000 genomes]
rs11665147	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11665150	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11665190	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13381344	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16963270	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16963289	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1964517	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2034968	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41527551	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56808255	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs595792	0.81[ASN][1000 genomes]
rs638868	0.88[ASN][1000 genomes]
rs686196	0.88[ASN][1000 genomes]
rs7226639	0.83[ASN][1000 genomes]
rs7239218	0.88[ASN][1000 genomes]
rs7243964	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8097263	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs968099	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29868200-29923800	Weak transcription	Gastric	stomach
2	chr18:29897200-29926400	Weak transcription	Fetal Stomach	stomach
3	chr18:29897400-29923800	Weak transcription	Esophagus	oesophagus
4	chr18:29897400-29923800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr18:29904400-29930000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr18:29906800-29923800	Weak transcription	Right Atrium	heart
7	chr18:29910600-29929800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr18:29912800-29923800	Weak transcription	Lung	lung
9	chr18:29913400-29926600	Weak transcription	Aorta	Aorta
10	chr18:29914000-29923400	Weak transcription	Right Ventricle	heart
11	chr18:29915000-29923400	Weak transcription	Fetal Muscle Leg	muscle
12	chr18:29915600-29929600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr18:29916000-29923800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr18:29916000-29924000	Weak transcription	Brain Anterior Caudate	brain
15	chr18:29916000-29925000	Weak transcription	Brain Angular Gyrus	brain
16	chr18:29916000-29925000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr18:29919400-29926600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr18:29920000-29930200	Weak transcription	Stomach Mucosa	stomach
19	chr18:29920200-29923800	Weak transcription	Psoas Muscle	Psoas
20	chr18:29921600-29938200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr18:29922200-29924200	Enhancers	Brain Substantia Nigra	brain
22	chr18:29922600-29923400	Weak transcription	Ovary	ovary
23	chr18:29922600-29923800	Weak transcription	Liver	Liver
24	chr18:29922600-29923800	Weak transcription	Left Ventricle	heart
25	chr18:29922600-29923800	Weak transcription	Pancreas	Pancrea
26	chr18:29922600-29924800	Weak transcription	Fetal Intestine Large	intestine
27	chr18:29922600-29929600	Weak transcription	Fetal Intestine Small	intestine
28	chr18:29922600-29929800	Weak transcription	Fetal Heart	heart

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