Variant report

Variant	rs7226639
Chromosome Location	chr18:29926765-29926766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10048362	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10502587	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10502596	0.87[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11081757	0.82[CEU][hapmap]
rs11504782	0.81[AMR][1000 genomes]
rs11665147	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs11665150	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs11665190	0.87[JPT][hapmap]
rs11872811	0.85[CEU][hapmap]
rs11873319	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11873325	0.87[CEU][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11874036	0.85[CEU][hapmap]
rs11876823	0.85[CEU][hapmap]
rs13381088	0.87[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13381344	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs16963233	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16963270	0.85[ASN][1000 genomes]
rs16963287	0.82[JPT][hapmap]
rs16963289	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs16963326	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs16963334	0.87[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17736440	0.82[CEU][hapmap]
rs1841119	0.85[CEU][hapmap]
rs1964517	0.85[ASN][1000 genomes]
rs2034968	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2421462	0.82[JPT][hapmap]
rs28500590	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3786308	0.87[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3786310	0.87[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3826611	0.87[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41527551	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs56808255	0.82[ASN][1000 genomes]
rs59211646	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7227973	0.83[ASN][1000 genomes]
rs7243964	0.90[ASN][1000 genomes]
rs73958414	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73958415	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs753784	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8085211	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8097263	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs968099	0.84[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29904400-29930000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr18:29910600-29929800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr18:29915600-29929600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr18:29920000-29930200	Weak transcription	Stomach Mucosa	stomach
5	chr18:29921600-29938200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr18:29922600-29929600	Weak transcription	Fetal Intestine Small	intestine
7	chr18:29922600-29929800	Weak transcription	Fetal Heart	heart
8	chr18:29924000-29926800	Weak transcription	Fetal Brain Female	brain
9	chr18:29924000-29929800	Weak transcription	Esophagus	oesophagus
10	chr18:29924000-29930800	Enhancers	Brain Anterior Caudate	brain
11	chr18:29924200-29926800	Weak transcription	Ovary	ovary
12	chr18:29924200-29926800	Weak transcription	Psoas Muscle	Psoas
13	chr18:29924200-29929800	Weak transcription	Fetal Muscle Leg	muscle
14	chr18:29924200-29936800	Weak transcription	Pancreas	Pancrea
15	chr18:29924200-29937000	Weak transcription	Left Ventricle	heart
16	chr18:29924400-29929600	Weak transcription	Liver	Liver
17	chr18:29924400-29929800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr18:29925000-29927000	Enhancers	Brain Angular Gyrus	brain
19	chr18:29925000-29930600	Enhancers	Brain Cingulate Gyrus	brain
20	chr18:29925400-29928000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr18:29925600-29928400	Enhancers	Brain Substantia Nigra	brain
22	chr18:29925800-29928000	Enhancers	Rectal Smooth Muscle	rectum
23	chr18:29926000-29927800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr18:29926200-29928000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr18:29926400-29926800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr18:29926400-29926800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr18:29926400-29926800	Enhancers	Fetal Stomach	stomach
28	chr18:29926400-29927000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr18:29926400-29927000	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr18:29926400-29927200	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr18:29926400-29927200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr18:29926400-29927200	Enhancers	Colon Smooth Muscle	Colon
33	chr18:29926400-29927600	Enhancers	Adipose Nuclei	Adipose
34	chr18:29926400-29928000	Enhancers	Fetal Lung	lung
35	chr18:29926600-29926800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr18:29926600-29926800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr18:29926600-29926800	Active TSS	Aorta	Aorta
38	chr18:29926600-29926800	Flanking Active TSS	Brain Hippocampus Middle	brain
39	chr18:29926600-29926800	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr18:29926600-29926800	Enhancers	Fetal Brain Male	brain
41	chr18:29926600-29927000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr18:29926600-29927000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr18:29926600-29927000	Enhancers	Right Atrium	heart
44	chr18:29926600-29927000	Active TSS	Stomach Smooth Muscle	stomach
45	chr18:29926600-29927000	Enhancers	NH-A	brain
46	chr18:29926600-29927000	Enhancers	Osteobl	bone
47	chr18:29926600-29927200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr18:29926600-29927200	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr18:29926600-29927200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr18:29926600-29927400	Enhancers	Fetal Kidney	kidney

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