Variant report

Variant	rs17736440
Chromosome Location	chr18:29933992-29933993
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29930256..29933123-chr18:29933358..29935857,3	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10502587	0.82[CEU][hapmap]
rs10502591	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10502594	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853420	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs11081757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11504784	0.81[EUR][1000 genomes]
rs11872355	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs11872811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs11874036	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs11876823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs13381184	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs16963314	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963351	0.85[EUR][1000 genomes]
rs16963353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963360	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963382	1.00[JPT][hapmap]
rs17736489	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1841119	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs3073261	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55730180	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55861080	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55976613	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57230958	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57546420	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58220828	0.85[EUR][1000 genomes]
rs58435646	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58863502	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59340191	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59452754	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59630704	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60154857	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60214917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60949633	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs619154	0.82[CHB][hapmap]
rs7226639	0.82[CEU][hapmap]
rs73954805	0.83[EUR][1000 genomes]
rs73954806	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73954807	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73956875	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73956877	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73956878	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73956881	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73956882	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73956890	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73956898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958413	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958418	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958422	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29921600-29938200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:29924200-29936800	Weak transcription	Pancreas	Pancrea
3	chr18:29924200-29937000	Weak transcription	Left Ventricle	heart
4	chr18:29926800-29951000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr18:29927200-29936800	Weak transcription	Psoas Muscle	Psoas
6	chr18:29927800-29938200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr18:29930000-29938200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr18:29930000-29938400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:29930000-29939600	Weak transcription	Fetal Stomach	stomach
10	chr18:29930000-29947600	Weak transcription	Esophagus	oesophagus
11	chr18:29930200-29934400	Weak transcription	Right Ventricle	heart
12	chr18:29930200-29937000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr18:29930200-29945400	Weak transcription	Fetal Intestine Small	intestine
14	chr18:29930200-29945600	Weak transcription	Fetal Intestine Large	intestine
15	chr18:29930200-29953600	Weak transcription	Fetal Muscle Leg	muscle
16	chr18:29930400-29934400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr18:29930400-29935400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr18:29930800-29934400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr18:29930800-29934400	Weak transcription	Aorta	Aorta
20	chr18:29930800-29935800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr18:29931200-29934400	Weak transcription	Fetal Heart	heart
22	chr18:29931200-29935600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr18:29931200-29936200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr18:29931200-29936200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr18:29931200-29948000	Weak transcription	Brain Angular Gyrus	brain
26	chr18:29931400-29935600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr18:29931400-29935800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr18:29931400-29940400	Weak transcription	Brain Substantia Nigra	brain
29	chr18:29931600-29935400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr18:29931600-29935400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr18:29931600-29935800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr18:29931600-29935800	Weak transcription	NH-A	brain
33	chr18:29931600-29936200	Weak transcription	NHDF-Ad	bronchial
34	chr18:29931600-29937400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr18:29931600-29942000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr18:29932000-29935800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr18:29932400-29935600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr18:29932600-29943600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr18:29932800-29934000	Enhancers	HepG2	liver
40	chr18:29932800-29935800	Weak transcription	Brain Anterior Caudate	brain
41	chr18:29932800-29938200	Weak transcription	Gastric	stomach
42	chr18:29932800-29954000	Weak transcription	Ovary	ovary
43	chr18:29933000-29948000	Weak transcription	Brain Hippocampus Middle	brain
44	chr18:29933600-29935800	Weak transcription	A549	lung
45	chr18:29933600-29939400	Weak transcription	Stomach Mucosa	stomach

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