Variant report

Variant	rs10853420
Chromosome Location	chr18:29991070-29991071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10502591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs10502594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10502596	0.87[CEU][hapmap];0.80[YRI][hapmap]
rs10502600	0.87[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11081757	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11504783	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11504784	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11872355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11872811	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11873325	0.87[CEU][hapmap];0.80[GIH][hapmap];0.93[MKK][hapmap]
rs11874036	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11876823	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13380968	0.86[CEU][hapmap]
rs13381088	0.87[CEU][hapmap];0.81[GIH][hapmap];0.84[LWK][hapmap];0.96[MKK][hapmap];0.85[TSI][hapmap];0.80[YRI][hapmap]
rs13381184	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16963334	0.87[CEU][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap];0.80[YRI][hapmap]
rs16963351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963353	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16963360	0.94[EUR][1000 genomes]
rs16963365	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16963373	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16963382	0.87[CEU][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs17736440	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs17736489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes]
rs1841119	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3073261	0.85[EUR][1000 genomes]
rs3786308	0.87[CEU][hapmap];0.81[GIH][hapmap];0.83[LWK][hapmap];0.96[MKK][hapmap];0.85[TSI][hapmap];0.80[YRI][hapmap]
rs3786310	0.87[CEU][hapmap];0.81[GIH][hapmap];0.96[MKK][hapmap];0.85[TSI][hapmap];0.80[YRI][hapmap]
rs3826611	0.87[CEU][hapmap];0.81[GIH][hapmap];0.84[LWK][hapmap];0.96[MKK][hapmap];0.85[TSI][hapmap];0.80[YRI][hapmap]
rs4644922	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55730180	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58220828	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59630704	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60214917	0.85[EUR][1000 genomes]
rs619154	0.82[CHB][hapmap]
rs73954805	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73954806	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73954807	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73956890	0.81[EUR][1000 genomes]
rs73956898	0.85[EUR][1000 genomes]
rs73958413	1.00[EUR][1000 genomes]
rs73958418	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73958422	0.94[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29963600-29999200	Weak transcription	Fetal Kidney	kidney
2	chr18:29982000-30005400	Weak transcription	Stomach Mucosa	stomach
3	chr18:29985400-29995200	Weak transcription	Pancreas	Pancrea
4	chr18:29987400-29999800	Weak transcription	Brain Angular Gyrus	brain
5	chr18:29987800-29995600	Weak transcription	Brain Hippocampus Middle	brain
6	chr18:29987800-29998200	Weak transcription	Left Ventricle	heart
7	chr18:29988600-29995400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr18:29988800-29995200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr18:29990000-29999400	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links