Variant report

Variant	rs3786308
Chromosome Location	chr18:29972964-29972965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10048362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10468834	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs10502587	0.87[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs10502591	0.87[CEU][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap]
rs10502594	0.87[CEU][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap]
rs10502596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853420	0.87[CEU][hapmap];0.81[GIH][hapmap];0.83[LWK][hapmap];0.96[MKK][hapmap];0.85[TSI][hapmap];0.80[YRI][hapmap]
rs11504782	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11662168	0.83[GIH][hapmap]
rs11665147	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs11665150	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs11665190	0.86[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs11872355	0.87[CEU][hapmap];0.80[YRI][hapmap]
rs11873319	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11873325	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.80[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13381088	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13381344	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs1350551	0.88[CEU][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs16963233	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16963270	0.89[ASN][1000 genomes]
rs16963287	0.81[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs16963289	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs16963314	0.87[CEU][hapmap];0.85[TSI][hapmap]
rs16963326	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs16963334	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16963353	0.81[GIH][hapmap]
rs17736489	0.87[CEU][hapmap]
rs17744064	0.88[EUR][1000 genomes]
rs17811714	0.85[EUR][1000 genomes]
rs17811798	0.85[EUR][1000 genomes]
rs1863605	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs1964517	0.89[ASN][1000 genomes]
rs2034968	0.86[CHB][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.89[ASN][1000 genomes]
rs2421462	0.81[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs28500590	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3786310	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3826611	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41527551	0.86[CHB][hapmap];0.93[JPT][hapmap];0.83[MEX][hapmap];0.89[ASN][1000 genomes]
rs55941037	0.85[EUR][1000 genomes]
rs56808255	0.92[ASN][1000 genomes]
rs59211646	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61311884	0.85[EUR][1000 genomes]
rs7226639	0.87[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs729692	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs729693	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs73954814	0.85[EUR][1000 genomes]
rs73958414	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958415	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs753784	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8085211	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8097263	0.86[CHB][hapmap];0.85[CHD][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.91[ASN][1000 genomes]
rs968099	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs9807749	0.85[EUR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29952800-29973200	Weak transcription	Fetal Stomach	stomach
2	chr18:29954000-29974000	Weak transcription	HSMMtube	muscle
3	chr18:29954200-29974400	Weak transcription	Fetal Muscle Leg	muscle
4	chr18:29954600-29974200	Weak transcription	Fetal Intestine Small	intestine
5	chr18:29959200-29975400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr18:29962800-29974000	Weak transcription	Left Ventricle	heart
7	chr18:29963600-29976200	Weak transcription	Aorta	Aorta
8	chr18:29963600-29999200	Weak transcription	Fetal Kidney	kidney
9	chr18:29964200-29974000	Weak transcription	Ovary	ovary
10	chr18:29964800-29985400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr18:29965800-29974000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr18:29966400-29973200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr18:29966400-29974000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr18:29966600-29975000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr18:29966600-29981400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr18:29966800-29985400	Weak transcription	Right Ventricle	heart
17	chr18:29967000-29986600	Weak transcription	Brain Angular Gyrus	brain
18	chr18:29967400-29974600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr18:29970000-29973200	Weak transcription	Stomach Mucosa	stomach
20	chr18:29970200-29974000	Weak transcription	Small Intestine	intestine
21	chr18:29971800-29973200	Weak transcription	Fetal Heart	heart
22	chr18:29971800-29974200	Weak transcription	Fetal Intestine Large	intestine
23	chr18:29971800-29974800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr18:29972200-29973200	Weak transcription	Liver	Liver
25	chr18:29972400-29974800	Weak transcription	Brain Anterior Caudate	brain
26	chr18:29972800-29973000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr18:29972800-29973000	Enhancers	Brain Substantia Nigra	brain
28	chr18:29972800-29973000	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr18:29972800-29973000	ZNF genes & repeats	Esophagus	oesophagus
30	chr18:29972800-29973000	Enhancers	Gastric	stomach
31	chr18:29972800-29973000	Genic enhancers	Pancreas	Pancrea

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