Variant report

Variant	rs10502594
Chromosome Location	chr18:29970570-29970571
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10502591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10502596	0.87[CEU][hapmap]
rs10502600	0.87[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs10853420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11081757	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11504783	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11504784	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11872355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11872811	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs11873325	0.87[CEU][hapmap];0.80[GIH][hapmap]
rs11874036	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs11876823	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs13380968	0.86[CEU][hapmap]
rs13381088	0.87[CEU][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap]
rs13381184	0.87[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16963285	0.86[MEX][hapmap]
rs16963314	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963334	0.87[CEU][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap]
rs16963351	1.00[EUR][1000 genomes]
rs16963353	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963360	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963365	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963373	0.90[EUR][1000 genomes]
rs16963382	0.87[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17736440	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17736489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1841119	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs3073261	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3786308	0.87[CEU][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap]
rs3786310	0.87[CEU][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap]
rs3826611	0.87[CEU][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap]
rs4644922	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55730180	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55861080	0.84[ASN][1000 genomes]
rs55976613	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57230958	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57546420	0.84[ASN][1000 genomes]
rs58220828	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58435646	0.84[ASN][1000 genomes]
rs58863502	0.84[ASN][1000 genomes]
rs59340191	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59452754	0.84[ASN][1000 genomes]
rs59630704	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60154857	0.84[ASN][1000 genomes]
rs60214917	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60949633	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs619154	0.82[CHB][hapmap]
rs73954805	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73954806	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73954807	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73956875	0.84[ASN][1000 genomes]
rs73956877	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73956878	0.84[ASN][1000 genomes]
rs73956881	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73956882	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73956890	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73956898	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958413	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958418	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958422	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29952800-29973200	Weak transcription	Fetal Stomach	stomach
2	chr18:29954000-29974000	Weak transcription	HSMMtube	muscle
3	chr18:29954200-29970800	Weak transcription	Fetal Intestine Large	intestine
4	chr18:29954200-29974400	Weak transcription	Fetal Muscle Leg	muscle
5	chr18:29954400-29972600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr18:29954600-29974200	Weak transcription	Fetal Intestine Small	intestine
7	chr18:29955800-29971000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr18:29959200-29972600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr18:29959200-29975400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr18:29962800-29972800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr18:29962800-29972800	Weak transcription	Gastric	stomach
12	chr18:29962800-29974000	Weak transcription	Left Ventricle	heart
13	chr18:29963600-29971200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr18:29963600-29976200	Weak transcription	Aorta	Aorta
15	chr18:29963600-29999200	Weak transcription	Fetal Kidney	kidney
16	chr18:29963800-29971200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr18:29964200-29974000	Weak transcription	Ovary	ovary
18	chr18:29964800-29985400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr18:29965600-29972800	Weak transcription	Esophagus	oesophagus
20	chr18:29965800-29971400	Weak transcription	Adipose Nuclei	Adipose
21	chr18:29965800-29974000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr18:29966400-29973200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr18:29966400-29974000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr18:29966600-29972800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr18:29966600-29975000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr18:29966600-29981400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr18:29966800-29985400	Weak transcription	Right Ventricle	heart
28	chr18:29967000-29971000	Weak transcription	Brain Anterior Caudate	brain
29	chr18:29967000-29971800	Weak transcription	Brain Hippocampus Middle	brain
30	chr18:29967000-29972200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr18:29967000-29986600	Weak transcription	Brain Angular Gyrus	brain
32	chr18:29967400-29972800	Weak transcription	Brain Substantia Nigra	brain
33	chr18:29967400-29974600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr18:29968400-29971800	Enhancers	Fetal Heart	heart
35	chr18:29970000-29971400	Weak transcription	Liver	Liver
36	chr18:29970000-29973200	Weak transcription	Stomach Mucosa	stomach
37	chr18:29970200-29972800	Weak transcription	Pancreas	Pancrea
38	chr18:29970200-29974000	Weak transcription	Small Intestine	intestine

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