Variant report

Variant	rs619154
Chromosome Location	chr18:29907474-29907475
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10502591	0.82[CHB][hapmap]
rs10502594	0.82[CHB][hapmap]
rs10853420	0.82[CHB][hapmap]
rs11081757	0.82[CHB][hapmap]
rs11872355	0.82[CHB][hapmap]
rs11872811	0.82[CHB][hapmap]
rs11874036	0.82[CHB][hapmap]
rs13381184	0.82[CHB][hapmap]
rs16963314	0.82[CHB][hapmap]
rs16963353	0.82[CHB][hapmap]
rs16963365	0.82[CHB][hapmap]
rs17736440	0.82[CHB][hapmap]
rs1841119	0.82[CHB][hapmap]
rs606638	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs616601	0.86[JPT][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs618004	0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs625361	0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs638142	0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs643836	0.82[EUR][1000 genomes]
rs644274	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs656946	0.86[JPT][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs657479	0.82[EUR][1000 genomes]
rs668857	0.86[JPT][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs671090	0.82[EUR][1000 genomes]
rs677721	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs681347	0.82[EUR][1000 genomes]
rs687850	0.82[EUR][1000 genomes]
rs8084215	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs619154	C18orf34	cis	parietal	SCAN

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29868200-29923800	Weak transcription	Gastric	stomach
2	chr18:29891000-29914000	Weak transcription	Fetal Brain Female	brain
3	chr18:29897200-29918800	Weak transcription	Fetal Intestine Large	intestine
4	chr18:29897200-29926400	Weak transcription	Fetal Stomach	stomach
5	chr18:29897400-29909000	Weak transcription	Left Ventricle	heart
6	chr18:29897400-29923800	Weak transcription	Esophagus	oesophagus
7	chr18:29897400-29923800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr18:29898000-29918600	Weak transcription	Fetal Intestine Small	intestine
9	chr18:29898200-29915400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr18:29899800-29908400	Weak transcription	Stomach Mucosa	stomach
11	chr18:29903400-29915800	Weak transcription	Fetal Brain Male	brain
12	chr18:29904200-29913200	Weak transcription	Pancreas	Pancrea
13	chr18:29904200-29913800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr18:29904200-29915200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr18:29904400-29930000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr18:29904600-29917200	Weak transcription	HMEC	breast
17	chr18:29905000-29908800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr18:29905400-29907800	Enhancers	Brain Anterior Caudate	brain
19	chr18:29905400-29907800	Enhancers	Brain Cingulate Gyrus	brain
20	chr18:29905400-29908200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr18:29905600-29907800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr18:29905600-29907800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr18:29905600-29907800	Enhancers	Brain Substantia Nigra	brain
24	chr18:29905600-29907800	Enhancers	Rectal Smooth Muscle	rectum
25	chr18:29905800-29907600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr18:29905800-29907600	Enhancers	Brain Hippocampus Middle	brain
27	chr18:29905800-29907600	Enhancers	Colon Smooth Muscle	Colon
28	chr18:29905800-29907800	Enhancers	Liver	Liver
29	chr18:29906000-29907600	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr18:29906200-29908800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr18:29906200-29909000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr18:29906200-29909200	Enhancers	Osteobl	bone
33	chr18:29906400-29907800	Enhancers	NH-A	brain
34	chr18:29906400-29908600	Enhancers	HSMM	muscle
35	chr18:29906400-29908800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr18:29906400-29909200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr18:29906600-29907800	Enhancers	Brain Angular Gyrus	brain
38	chr18:29906600-29907800	Enhancers	Fetal Lung	lung
39	chr18:29906800-29908000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr18:29906800-29908600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr18:29906800-29912600	Weak transcription	Psoas Muscle	Psoas
42	chr18:29906800-29915200	Weak transcription	Adipose Nuclei	Adipose
43	chr18:29906800-29917800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr18:29906800-29922200	Weak transcription	Ovary	ovary
45	chr18:29906800-29923800	Weak transcription	Right Atrium	heart
46	chr18:29907000-29908000	Enhancers	Stomach Smooth Muscle	stomach
47	chr18:29907000-29908200	Weak transcription	HSMMtube	muscle
48	chr18:29907000-29908600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr18:29907000-29911600	Weak transcription	Fetal Heart	heart
50	chr18:29907000-29911800	Weak transcription	Right Ventricle	heart

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