Variant report

Variant	rs11872811
Chromosome Location	chr18:29899564-29899565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29891994..29893877-chr18:29897571..29900006,2	MCF-7	breast:
2	chr18:29895037..29897248-chr18:29897872..29900366,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10502587	0.85[CEU][hapmap]
rs10502591	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs10502594	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs10502600	1.00[JPT][hapmap]
rs10853420	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11081757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11504784	0.84[ASN][1000 genomes]
rs11872355	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11874036	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11876823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13381184	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16963314	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs16963351	0.84[ASN][1000 genomes]
rs16963353	1.00[CHB][hapmap]
rs16963365	1.00[CHB][hapmap]
rs17736440	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs17736489	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs17743259	0.82[CEU][hapmap]
rs1824304	0.81[TSI][hapmap]
rs1841119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3073261	0.86[EUR][1000 genomes]
rs55861080	1.00[EUR][1000 genomes]
rs55976613	1.00[EUR][1000 genomes]
rs57230958	0.97[EUR][1000 genomes]
rs57546420	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58220828	0.84[ASN][1000 genomes]
rs58435646	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58863502	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59340191	0.97[EUR][1000 genomes]
rs59452754	1.00[EUR][1000 genomes]
rs60154857	1.00[EUR][1000 genomes]
rs60214917	0.86[EUR][1000 genomes]
rs60949633	1.00[EUR][1000 genomes]
rs619154	0.82[CHB][hapmap]
rs7226639	0.85[CEU][hapmap]
rs7230250	0.81[ASN][1000 genomes]
rs73954805	0.84[ASN][1000 genomes]
rs73956875	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956877	0.97[EUR][1000 genomes]
rs73956878	1.00[EUR][1000 genomes]
rs73956881	0.97[EUR][1000 genomes]
rs73956882	0.95[EUR][1000 genomes]
rs73956890	0.86[EUR][1000 genomes]
rs73956898	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29868200-29923800	Weak transcription	Gastric	stomach
2	chr18:29889400-29904200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:29890200-29902200	Weak transcription	Spleen	Spleen
4	chr18:29890400-29904000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr18:29891000-29905800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr18:29891000-29914000	Weak transcription	Fetal Brain Female	brain
7	chr18:29891200-29905600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr18:29893400-29903200	Weak transcription	Pancreas	Pancrea
9	chr18:29896600-29900000	Enhancers	Adipose Nuclei	Adipose
10	chr18:29896800-29899800	Enhancers	HepG2	liver
11	chr18:29897200-29899600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr18:29897200-29903200	Weak transcription	Psoas Muscle	Psoas
13	chr18:29897200-29903400	Weak transcription	Right Ventricle	heart
14	chr18:29897200-29918800	Weak transcription	Fetal Intestine Large	intestine
15	chr18:29897200-29926400	Weak transcription	Fetal Stomach	stomach
16	chr18:29897400-29899600	Enhancers	Brain Hippocampus Middle	brain
17	chr18:29897400-29909000	Weak transcription	Left Ventricle	heart
18	chr18:29897400-29923800	Weak transcription	Esophagus	oesophagus
19	chr18:29897400-29923800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr18:29897800-29901800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr18:29898000-29899800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr18:29898000-29906000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr18:29898000-29906400	Weak transcription	Small Intestine	intestine
24	chr18:29898000-29906600	Weak transcription	Brain Angular Gyrus	brain
25	chr18:29898000-29918600	Weak transcription	Fetal Intestine Small	intestine
26	chr18:29898200-29901400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr18:29898200-29902000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr18:29898200-29915400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr18:29898400-29900000	Enhancers	Fetal Heart	heart
30	chr18:29898400-29903800	Weak transcription	Fetal Kidney	kidney
31	chr18:29898400-29904000	Weak transcription	Brain Anterior Caudate	brain
32	chr18:29898600-29899600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr18:29898600-29904000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr18:29898800-29900000	Enhancers	Liver	Liver
35	chr18:29898800-29901800	Weak transcription	Ovary	ovary
36	chr18:29898800-29903400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr18:29898800-29904000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr18:29898800-29904000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr18:29898800-29904000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr18:29898800-29904000	Weak transcription	Fetal Lung	lung
41	chr18:29898800-29904000	Weak transcription	Osteobl	bone
42	chr18:29899000-29899600	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr18:29899000-29903200	Weak transcription	HSMMtube	muscle
44	chr18:29899000-29904000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr18:29899000-29904000	Weak transcription	NHDF-Ad	bronchial
46	chr18:29899200-29899600	Weak transcription	Stomach Mucosa	stomach
47	chr18:29899200-29901800	Weak transcription	Fetal Muscle Leg	muscle
48	chr18:29899200-29903800	Weak transcription	HSMM	muscle
49	chr18:29899200-29904000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr18:29899200-29904000	Weak transcription	Muscle Satellite Cultured Cells	--

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