Variant report

Variant	rs1824304
Chromosome Location	chr18:29904044-29904045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29896360..29897935-chr18:29901825..29904220,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10502592	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11665147	0.81[CEU][hapmap]
rs11665150	0.81[CEU][hapmap]
rs11665190	0.81[CEU][hapmap]
rs11872811	0.81[TSI][hapmap]
rs11874036	0.81[TSI][hapmap]
rs11876773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16963285	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16963289	0.81[CEU][hapmap]
rs2034968	0.81[CEU][hapmap]
rs41527551	0.81[CEU][hapmap]
rs616601	0.88[CHB][hapmap]
rs618004	0.88[CHB][hapmap]
rs625361	0.88[CHB][hapmap]
rs638142	0.88[CHB][hapmap]
rs656946	0.88[CHB][hapmap]
rs657479	0.88[CHB][hapmap]
rs668857	0.88[CHB][hapmap]
rs681347	0.88[CHB][hapmap];0.82[YRI][hapmap]
rs7230250	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs736218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8097263	0.81[CEU][hapmap]
rs968099	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29868200-29923800	Weak transcription	Gastric	stomach
2	chr18:29889400-29904200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:29891000-29905800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr18:29891000-29914000	Weak transcription	Fetal Brain Female	brain
5	chr18:29891200-29905600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr18:29897200-29918800	Weak transcription	Fetal Intestine Large	intestine
7	chr18:29897200-29926400	Weak transcription	Fetal Stomach	stomach
8	chr18:29897400-29909000	Weak transcription	Left Ventricle	heart
9	chr18:29897400-29923800	Weak transcription	Esophagus	oesophagus
10	chr18:29897400-29923800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr18:29898000-29906000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr18:29898000-29906400	Weak transcription	Small Intestine	intestine
13	chr18:29898000-29906600	Weak transcription	Brain Angular Gyrus	brain
14	chr18:29898000-29918600	Weak transcription	Fetal Intestine Small	intestine
15	chr18:29898200-29915400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr18:29899400-29905600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr18:29899800-29908400	Weak transcription	Stomach Mucosa	stomach
18	chr18:29900000-29905800	Weak transcription	Liver	Liver
19	chr18:29900000-29906000	Weak transcription	Fetal Heart	heart
20	chr18:29902400-29905200	Weak transcription	HepG2	liver
21	chr18:29902600-29907400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr18:29902800-29905600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr18:29903200-29904200	Enhancers	Pancreas	Pancrea
24	chr18:29903200-29904800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr18:29903400-29904200	Enhancers	Fetal Muscle Trunk	muscle
26	chr18:29903400-29915800	Weak transcription	Fetal Brain Male	brain
27	chr18:29903600-29906400	Weak transcription	Psoas Muscle	Psoas
28	chr18:29903800-29904200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr18:29903800-29904600	Enhancers	Fetal Kidney	kidney
30	chr18:29903800-29904800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr18:29903800-29904800	Enhancers	Brain Hippocampus Middle	brain
32	chr18:29904000-29904200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr18:29904000-29904200	Flanking Active TSS	Fetal Muscle Leg	muscle
34	chr18:29904000-29904200	Flanking Active TSS	Ovary	ovary
35	chr18:29904000-29904200	Enhancers	Right Ventricle	heart
36	chr18:29904000-29904200	Enhancers	NHDF-Ad	bronchial
37	chr18:29904000-29904400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr18:29904000-29904400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr18:29904000-29904400	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr18:29904000-29904400	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr18:29904000-29904400	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr18:29904000-29904400	Flanking Active TSS	Osteobl	bone
43	chr18:29904000-29904600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr18:29904000-29904600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr18:29904000-29904600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr18:29904000-29904600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
47	chr18:29904000-29904600	Enhancers	Brain Substantia Nigra	brain
48	chr18:29904000-29904600	Enhancers	Fetal Lung	lung
49	chr18:29904000-29904600	Enhancers	HMEC	breast
50	chr18:29904000-29904600	Flanking Active TSS	HSMM	muscle

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