Variant report

Variant	rs11665147
Chromosome Location	chr18:29968307-29968308
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10048362	0.91[ASN][1000 genomes]
rs1037753	0.86[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs10438935	0.87[EUR][1000 genomes]
rs10468833	0.87[EUR][1000 genomes]
rs10502592	0.91[CEU][hapmap]
rs10502596	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs10775451	0.87[EUR][1000 genomes]
rs10853421	0.87[EUR][1000 genomes]
rs11081761	1.00[YRI][hapmap];0.94[EUR][1000 genomes]
rs11081763	0.87[EUR][1000 genomes]
rs11081764	0.87[EUR][1000 genomes]
rs11081765	0.85[EUR][1000 genomes]
rs11504782	0.81[ASN][1000 genomes]
rs11663076	0.81[JPT][hapmap];0.81[YRI][hapmap]
rs11665150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11665190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11873325	0.86[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs11876773	0.81[CEU][hapmap]
rs13380968	0.87[EUR][1000 genomes]
rs13381088	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs13381344	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1458858	0.87[EUR][1000 genomes]
rs1458861	0.81[JPT][hapmap];0.86[YRI][hapmap]
rs16963270	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16963285	0.91[CEU][hapmap]
rs16963287	0.93[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16963289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963326	0.86[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs16963334	0.86[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs17744051	0.80[EUR][1000 genomes]
rs1824304	0.81[CEU][hapmap]
rs1964517	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2034968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2052757	0.80[EUR][1000 genomes]
rs2055060	0.87[EUR][1000 genomes]
rs2421462	0.93[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28500590	0.90[ASN][1000 genomes]
rs3786308	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs3786310	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs3826611	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs41527551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4561543	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4597393	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56808255	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57978863	0.89[EUR][1000 genomes]
rs59211646	0.90[ASN][1000 genomes]
rs60451418	0.92[EUR][1000 genomes]
rs60928334	0.87[EUR][1000 genomes]
rs6506968	0.87[EUR][1000 genomes]
rs7226639	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs7227973	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7229026	0.87[EUR][1000 genomes]
rs7230250	0.82[CEU][hapmap]
rs7233422	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7243086	0.87[EUR][1000 genomes]
rs7243481	0.87[EUR][1000 genomes]
rs7243964	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72933532	0.87[EUR][1000 genomes]
rs72933545	0.87[EUR][1000 genomes]
rs7359734	0.87[EUR][1000 genomes]
rs736218	0.82[CEU][hapmap]
rs73958414	0.91[ASN][1000 genomes]
rs73958415	0.90[ASN][1000 genomes]
rs8091089	0.85[EUR][1000 genomes]
rs8093807	0.87[EUR][1000 genomes]
rs8094914	0.93[YRI][hapmap]
rs8096329	0.87[EUR][1000 genomes]
rs8097263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs968099	0.91[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs968177	0.87[EUR][1000 genomes]
rs968178	0.87[EUR][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29952800-29973200	Weak transcription	Fetal Stomach	stomach
2	chr18:29954000-29974000	Weak transcription	HSMMtube	muscle
3	chr18:29954200-29970800	Weak transcription	Fetal Intestine Large	intestine
4	chr18:29954200-29974400	Weak transcription	Fetal Muscle Leg	muscle
5	chr18:29954400-29972600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr18:29954600-29974200	Weak transcription	Fetal Intestine Small	intestine
7	chr18:29955800-29971000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr18:29959200-29972600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr18:29959200-29975400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr18:29960800-29969800	Weak transcription	Small Intestine	intestine
11	chr18:29962800-29972800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr18:29962800-29972800	Weak transcription	Gastric	stomach
13	chr18:29962800-29974000	Weak transcription	Left Ventricle	heart
14	chr18:29963400-29969800	Weak transcription	Pancreas	Pancrea
15	chr18:29963600-29971200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr18:29963600-29976200	Weak transcription	Aorta	Aorta
17	chr18:29963600-29999200	Weak transcription	Fetal Kidney	kidney
18	chr18:29963800-29971200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr18:29964200-29974000	Weak transcription	Ovary	ovary
20	chr18:29964800-29985400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr18:29965200-29968600	Enhancers	Fetal Brain Male	brain
22	chr18:29965600-29972800	Weak transcription	Esophagus	oesophagus
23	chr18:29965800-29971400	Weak transcription	Adipose Nuclei	Adipose
24	chr18:29965800-29974000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr18:29966200-29969400	Weak transcription	Stomach Mucosa	stomach
26	chr18:29966400-29973200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr18:29966400-29974000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr18:29966600-29972800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr18:29966600-29975000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr18:29966600-29981400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr18:29966800-29985400	Weak transcription	Right Ventricle	heart
32	chr18:29967000-29968400	Weak transcription	Fetal Heart	heart
33	chr18:29967000-29968600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr18:29967000-29971000	Weak transcription	Brain Anterior Caudate	brain
35	chr18:29967000-29971800	Weak transcription	Brain Hippocampus Middle	brain
36	chr18:29967000-29972200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr18:29967000-29986600	Weak transcription	Brain Angular Gyrus	brain
38	chr18:29967400-29972800	Weak transcription	Brain Substantia Nigra	brain
39	chr18:29967400-29974600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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