Variant report

Variant	rs59211646
Chromosome Location	chr18:29986271-29986272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29984305..29986274-chr18:30049162..30050819,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141441	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10048362	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10468834	0.85[EUR][1000 genomes]
rs10502587	0.81[EUR][1000 genomes]
rs10502596	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11504782	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11665147	0.90[ASN][1000 genomes]
rs11665150	0.90[ASN][1000 genomes]
rs11665190	0.86[ASN][1000 genomes]
rs11873319	0.86[EUR][1000 genomes]
rs11873325	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13381088	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13381344	0.90[ASN][1000 genomes]
rs1350551	0.85[EUR][1000 genomes]
rs16963233	0.86[EUR][1000 genomes]
rs16963270	0.88[ASN][1000 genomes]
rs16963287	0.85[ASN][1000 genomes]
rs16963289	0.90[ASN][1000 genomes]
rs16963326	0.92[ASN][1000 genomes]
rs16963334	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17744064	0.88[EUR][1000 genomes]
rs17811714	0.85[EUR][1000 genomes]
rs17811798	0.85[EUR][1000 genomes]
rs1863605	0.85[EUR][1000 genomes]
rs1964517	0.88[ASN][1000 genomes]
rs2034968	0.88[ASN][1000 genomes]
rs2421462	0.84[ASN][1000 genomes]
rs28500590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3786308	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3786310	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3826611	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41527551	0.88[ASN][1000 genomes]
rs55941037	0.85[EUR][1000 genomes]
rs56808255	0.91[ASN][1000 genomes]
rs61311884	0.85[EUR][1000 genomes]
rs7226639	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs729692	0.85[EUR][1000 genomes]
rs729693	0.85[EUR][1000 genomes]
rs73954814	0.85[EUR][1000 genomes]
rs73958414	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73958415	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753784	0.85[EUR][1000 genomes]
rs8085211	0.86[EUR][1000 genomes]
rs8097263	0.90[ASN][1000 genomes]
rs968099	0.81[ASN][1000 genomes]
rs9807749	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347612	chr18:29975003-29990362	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29963600-29999200	Weak transcription	Fetal Kidney	kidney
2	chr18:29967000-29986600	Weak transcription	Brain Angular Gyrus	brain
3	chr18:29981800-29986800	Weak transcription	Adipose Nuclei	Adipose
4	chr18:29982000-30005400	Weak transcription	Stomach Mucosa	stomach
5	chr18:29982600-29987000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr18:29982600-29987200	Weak transcription	Fetal Heart	heart
7	chr18:29982800-29987000	Weak transcription	Brain Hippocampus Middle	brain
8	chr18:29982800-29987000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr18:29983000-29987200	Weak transcription	Ovary	ovary
10	chr18:29983800-29987000	Weak transcription	Gastric	stomach
11	chr18:29983800-29987600	Weak transcription	Brain Anterior Caudate	brain
12	chr18:29985400-29995200	Weak transcription	Pancreas	Pancrea
13	chr18:29985600-29986400	Enhancers	Stomach Smooth Muscle	stomach
14	chr18:29985800-29987000	Weak transcription	Left Ventricle	heart
15	chr18:29985800-29987200	Weak transcription	Psoas Muscle	Psoas
16	chr18:29985800-29987600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr18:29985800-29987600	Enhancers	Brain Substantia Nigra	brain
18	chr18:29986000-29988400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr18:29986200-29986400	Enhancers	Sigmoid Colon	Sigmoid Colon

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