Variant report

Variant	rs16963287
Chromosome Location	chr18:29967333-29967334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10048362	0.86[ASN][1000 genomes]
rs1037753	0.93[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10438935	0.81[YRI][hapmap]
rs10468904	0.88[ASW][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap];0.81[EUR][1000 genomes]
rs10502596	0.81[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10775451	0.80[YRI][hapmap]
rs10853421	0.93[GIH][hapmap];0.80[YRI][hapmap]
rs11081761	0.93[GIH][hapmap];0.80[EUR][1000 genomes]
rs11081765	0.80[YRI][hapmap]
rs11665147	0.93[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11665150	0.93[CHB][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11665190	0.93[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11873325	0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs11874614	0.93[YRI][hapmap];0.81[EUR][1000 genomes]
rs13380944	0.93[GIH][hapmap]
rs13381088	0.81[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs13381344	0.93[CHB][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1458858	0.80[YRI][hapmap]
rs1458865	0.93[GIH][hapmap]
rs1689030	0.88[JPT][hapmap]
rs16963270	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16963285	0.86[GIH][hapmap]
rs16963289	0.93[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16963326	0.81[CHB][hapmap]
rs16963334	0.81[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs16963381	0.96[GIH][hapmap]
rs17744051	0.93[GIH][hapmap]
rs1964517	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2034968	0.93[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2052757	0.80[YRI][hapmap]
rs2055060	0.93[GIH][hapmap]
rs2421462	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28500590	0.85[ASN][1000 genomes]
rs3786308	0.81[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs3786310	0.81[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs3826611	0.81[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs41527551	0.93[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4561543	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4597393	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56808255	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58263042	0.83[AMR][1000 genomes]
rs59211646	0.85[ASN][1000 genomes]
rs595792	0.88[JPT][hapmap]
rs60451418	0.80[EUR][1000 genomes]
rs638868	0.88[JPT][hapmap]
rs6506968	0.93[GIH][hapmap];0.80[YRI][hapmap]
rs686196	0.83[ASW][hapmap];0.88[JPT][hapmap]
rs7226639	0.82[JPT][hapmap]
rs7228553	0.88[ASW][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap];0.81[EUR][1000 genomes]
rs7229026	0.80[YRI][hapmap]
rs7233422	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7245123	0.88[ASW][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap]
rs7359734	0.93[GIH][hapmap];0.80[YRI][hapmap]
rs73958414	0.86[ASN][1000 genomes]
rs73958415	0.85[ASN][1000 genomes]
rs8083848	0.96[GIH][hapmap]
rs8097263	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs968099	0.95[CHD][hapmap];0.88[JPT][hapmap]
rs968177	0.80[YRI][hapmap]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29952800-29973200	Weak transcription	Fetal Stomach	stomach
2	chr18:29954000-29974000	Weak transcription	HSMMtube	muscle
3	chr18:29954200-29970800	Weak transcription	Fetal Intestine Large	intestine
4	chr18:29954200-29974400	Weak transcription	Fetal Muscle Leg	muscle
5	chr18:29954400-29972600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr18:29954600-29974200	Weak transcription	Fetal Intestine Small	intestine
7	chr18:29955800-29971000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr18:29959200-29972600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr18:29959200-29975400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr18:29960800-29969800	Weak transcription	Small Intestine	intestine
11	chr18:29962800-29972800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr18:29962800-29972800	Weak transcription	Gastric	stomach
13	chr18:29962800-29974000	Weak transcription	Left Ventricle	heart
14	chr18:29963400-29969800	Weak transcription	Pancreas	Pancrea
15	chr18:29963600-29971200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr18:29963600-29976200	Weak transcription	Aorta	Aorta
17	chr18:29963600-29999200	Weak transcription	Fetal Kidney	kidney
18	chr18:29963800-29971200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr18:29964200-29974000	Weak transcription	Ovary	ovary
20	chr18:29964800-29985400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr18:29965200-29968600	Enhancers	Fetal Brain Male	brain
22	chr18:29965600-29972800	Weak transcription	Esophagus	oesophagus
23	chr18:29965800-29971400	Weak transcription	Adipose Nuclei	Adipose
24	chr18:29965800-29974000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr18:29966200-29967400	Enhancers	Brain Substantia Nigra	brain
26	chr18:29966200-29969400	Weak transcription	Stomach Mucosa	stomach
27	chr18:29966400-29967400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr18:29966400-29973200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr18:29966400-29974000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr18:29966600-29967400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr18:29966600-29972800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr18:29966600-29975000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr18:29966600-29981400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr18:29966800-29967400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr18:29966800-29985400	Weak transcription	Right Ventricle	heart
36	chr18:29967000-29968400	Weak transcription	Fetal Heart	heart
37	chr18:29967000-29968600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr18:29967000-29971000	Weak transcription	Brain Anterior Caudate	brain
39	chr18:29967000-29971800	Weak transcription	Brain Hippocampus Middle	brain
40	chr18:29967000-29972200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr18:29967000-29986600	Weak transcription	Brain Angular Gyrus	brain
42	chr18:29967200-29967400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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