Variant report

Variant	rs2052757
Chromosome Location	chr18:30019340-30019341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30017894..30019395-chr18:30030644..30032301,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10438935	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10468833	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10468834	0.85[ASN][1000 genomes]
rs10468904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10775451	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10853421	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11081761	0.95[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11081762	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11081763	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11081764	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11081765	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11662168	0.81[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11665147	0.80[EUR][1000 genomes]
rs11665150	0.80[EUR][1000 genomes]
rs11665190	0.80[EUR][1000 genomes]
rs11874614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12604457	0.82[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13380944	0.86[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs13380968	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13381344	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs1350551	0.85[ASN][1000 genomes]
rs1380085	0.86[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs1458858	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1458865	0.93[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16963270	0.85[EUR][1000 genomes]
rs16963287	0.80[YRI][hapmap]
rs16963289	0.80[EUR][1000 genomes]
rs16963381	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17744051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17744064	0.85[ASN][1000 genomes]
rs17744164	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17811666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17811690	0.81[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17811714	0.85[ASN][1000 genomes]
rs17811798	0.85[ASN][1000 genomes]
rs1863605	0.85[ASN][1000 genomes]
rs1964517	0.84[EUR][1000 genomes]
rs2034968	0.84[EUR][1000 genomes]
rs2055060	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2421462	0.93[CEU][hapmap];0.82[YRI][hapmap];0.89[EUR][1000 genomes]
rs41527551	0.84[EUR][1000 genomes]
rs4561543	0.82[EUR][1000 genomes]
rs4597393	0.84[EUR][1000 genomes]
rs55941037	0.85[ASN][1000 genomes]
rs56808255	0.81[EUR][1000 genomes]
rs57978863	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60451418	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60928334	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61311884	0.85[ASN][1000 genomes]
rs6506968	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7228553	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7229026	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7233422	0.83[EUR][1000 genomes]
rs7243086	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7243481	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7243539	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7245123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72933532	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72933545	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs729691	0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs729692	0.85[ASN][1000 genomes]
rs729693	0.85[ASN][1000 genomes]
rs7359734	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73954814	0.85[ASN][1000 genomes]
rs8083848	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8087581	0.82[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8087781	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8089997	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs8091089	0.93[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8093474	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8093807	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8094711	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8094914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8096329	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8097263	0.84[EUR][1000 genomes]
rs968177	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs968178	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9807749	0.85[ASN][1000 genomes]
rs982521	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30012800-30021800	Enhancers	Fetal Heart	heart
2	chr18:30015600-30020400	Enhancers	Brain Hippocampus Middle	brain
3	chr18:30015800-30021200	Weak transcription	Fetal Lung	lung
4	chr18:30016000-30019400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr18:30016400-30019800	Weak transcription	Adipose Nuclei	Adipose
6	chr18:30016800-30020000	Enhancers	Brain Angular Gyrus	brain
7	chr18:30016800-30020800	Enhancers	Brain Substantia Nigra	brain
8	chr18:30017000-30020400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr18:30017000-30020600	Enhancers	Brain Cingulate Gyrus	brain
10	chr18:30017000-30021600	Enhancers	Fetal Brain Male	brain
11	chr18:30017200-30021200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr18:30017400-30019600	Weak transcription	Fetal Brain Female	brain
13	chr18:30017600-30021600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr18:30018000-30019600	Enhancers	Aorta	Aorta
15	chr18:30018000-30021400	Weak transcription	Colon Smooth Muscle	Colon
16	chr18:30018200-30019400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr18:30018200-30020000	Enhancers	Gastric	stomach
18	chr18:30018200-30020000	Enhancers	Left Ventricle	heart
19	chr18:30018200-30020800	Enhancers	Stomach Mucosa	stomach
20	chr18:30018200-30021800	Weak transcription	Fetal Intestine Small	intestine
21	chr18:30018400-30020600	Weak transcription	Fetal Kidney	kidney
22	chr18:30018600-30019800	Weak transcription	Lung	lung
23	chr18:30018600-30020600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr18:30018600-30021400	Weak transcription	Liver	Liver
25	chr18:30018600-30021600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr18:30019000-30019400	Weak transcription	Brain Anterior Caudate	brain
27	chr18:30019000-30019800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr18:30019000-30019800	Weak transcription	Right Atrium	heart
29	chr18:30019000-30020600	Weak transcription	Ovary	ovary
30	chr18:30019000-30021400	Weak transcription	Psoas Muscle	Psoas
31	chr18:30019000-30021400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr18:30019000-30023400	Weak transcription	Right Ventricle	heart
33	chr18:30019000-30024200	Weak transcription	Pancreas	Pancrea
34	chr18:30019000-30028400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr18:30019200-30019400	Weak transcription	Esophagus	oesophagus
36	chr18:30019200-30020400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr18:30019200-30023400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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