Variant report

Variant	rs7243086
Chromosome Location	chr18:30007292-30007293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10438935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10468833	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10468834	0.87[ASN][1000 genomes]
rs10468904	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10775451	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10853421	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11081761	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11081762	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11081763	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11081764	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11081765	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11662168	0.84[ASN][1000 genomes]
rs11665147	0.87[EUR][1000 genomes]
rs11665150	0.87[EUR][1000 genomes]
rs11665190	0.87[EUR][1000 genomes]
rs11874614	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12604457	0.84[ASN][1000 genomes]
rs13380944	0.86[ASN][1000 genomes]
rs13380968	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13381344	0.90[EUR][1000 genomes]
rs1350551	0.87[ASN][1000 genomes]
rs1380085	0.83[ASN][1000 genomes]
rs1458858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458865	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16963270	0.84[EUR][1000 genomes]
rs16963289	0.87[EUR][1000 genomes]
rs16963381	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17744051	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17744064	0.87[ASN][1000 genomes]
rs17744164	0.84[ASN][1000 genomes]
rs17811666	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17811690	0.84[ASN][1000 genomes]
rs17811714	0.87[ASN][1000 genomes]
rs17811798	0.87[ASN][1000 genomes]
rs1863605	0.87[ASN][1000 genomes]
rs1964517	0.83[EUR][1000 genomes]
rs2034968	0.83[EUR][1000 genomes]
rs2052757	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2055060	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2421462	0.83[EUR][1000 genomes]
rs41527551	0.83[EUR][1000 genomes]
rs55941037	0.87[ASN][1000 genomes]
rs56808255	0.88[EUR][1000 genomes]
rs57978863	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60451418	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60928334	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61311884	0.87[ASN][1000 genomes]
rs6506968	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7228553	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7229026	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7243481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7243539	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7245123	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72933532	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72933545	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729691	0.83[ASN][1000 genomes]
rs729692	0.87[ASN][1000 genomes]
rs729693	0.87[ASN][1000 genomes]
rs7359734	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73954814	0.87[ASN][1000 genomes]
rs8083848	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8087581	0.84[ASN][1000 genomes]
rs8087781	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8091089	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8093474	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8093807	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8094711	0.84[ASN][1000 genomes]
rs8094914	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8096329	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8097263	0.83[EUR][1000 genomes]
rs968177	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs968178	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9807749	0.87[ASN][1000 genomes]
rs982521	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29999400-30007400	Weak transcription	Fetal Intestine Small	intestine
2	chr18:29999600-30007400	Weak transcription	Right Ventricle	heart
3	chr18:30001400-30018400	Weak transcription	Esophagus	oesophagus
4	chr18:30002000-30008600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr18:30002400-30007400	Weak transcription	Left Ventricle	heart
6	chr18:30002400-30014800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:30002400-30017200	Weak transcription	Right Atrium	heart
8	chr18:30002400-30018200	Weak transcription	Psoas Muscle	Psoas
9	chr18:30004200-30007400	Weak transcription	Aorta	Aorta
10	chr18:30004600-30008600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr18:30004800-30008400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr18:30005200-30018200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr18:30005400-30007400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr18:30005400-30007400	Enhancers	HSMM	muscle
15	chr18:30005400-30007600	Enhancers	Stomach Mucosa	stomach
16	chr18:30005400-30007800	Enhancers	HepG2	liver
17	chr18:30005600-30008200	Weak transcription	Fetal Brain Male	brain
18	chr18:30005600-30008200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr18:30005600-30009000	Weak transcription	Brain Hippocampus Middle	brain
20	chr18:30005600-30009400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr18:30005600-30009600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr18:30005800-30007400	Weak transcription	Brain Substantia Nigra	brain
23	chr18:30005800-30007400	Weak transcription	Fetal Lung	lung
24	chr18:30005800-30009200	Enhancers	Fetal Heart	heart
25	chr18:30005800-30009400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr18:30005800-30009600	Weak transcription	Brain Anterior Caudate	brain
27	chr18:30005800-30009800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr18:30005800-30010000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr18:30006000-30007400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr18:30006000-30007400	Weak transcription	Hela-S3	cervix
31	chr18:30006000-30008600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr18:30006200-30007400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr18:30006200-30007400	Weak transcription	Ovary	ovary
34	chr18:30006200-30018200	Weak transcription	Pancreas	Pancrea
35	chr18:30006400-30007400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr18:30006400-30014200	Weak transcription	Small Intestine	intestine
37	chr18:30006400-30016800	Weak transcription	Brain Angular Gyrus	brain
38	chr18:30006800-30007800	Enhancers	Liver	Liver
39	chr18:30007000-30007400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr18:30007000-30007400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr18:30007000-30007600	Enhancers	Rectal Smooth Muscle	rectum
42	chr18:30007200-30007800	Enhancers	A549	lung
43	chr18:30007200-30007800	Enhancers	NH-A	brain

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