Variant report

Variant	rs2421462
Chromosome Location	chr18:29989257-29989258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10048362	0.85[ASN][1000 genomes]
rs1037753	0.93[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10438935	0.92[CEU][hapmap];0.83[YRI][hapmap];0.83[EUR][1000 genomes]
rs10468833	0.83[EUR][1000 genomes]
rs10468904	0.93[CEU][hapmap];0.93[YRI][hapmap];0.90[EUR][1000 genomes]
rs10502596	0.81[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs10775451	0.85[CEU][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs10853421	0.85[CEU][hapmap];0.80[YRI][hapmap];0.83[EUR][1000 genomes]
rs11081761	0.89[EUR][1000 genomes]
rs11081763	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs11081764	0.83[EUR][1000 genomes]
rs11081765	0.85[CEU][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes]
rs11665147	0.93[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11665150	0.93[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11665190	0.93[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11873325	0.81[CHB][hapmap];0.85[ASN][1000 genomes]
rs11874614	0.93[CEU][hapmap];0.94[YRI][hapmap];0.90[EUR][1000 genomes]
rs13380968	0.83[EUR][1000 genomes]
rs13381088	0.81[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs13381344	0.92[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1458858	0.85[CEU][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs1458865	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs1689030	0.84[JPT][hapmap]
rs16963270	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16963287	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16963289	0.93[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16963326	0.81[CHB][hapmap]
rs16963334	0.81[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs16963381	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs17744051	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs17811666	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs1964517	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2034968	0.93[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2052757	0.93[CEU][hapmap];0.82[YRI][hapmap];0.89[EUR][1000 genomes]
rs2055060	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs28500590	0.84[ASN][1000 genomes]
rs3786308	0.81[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs3786310	0.81[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs3826611	0.81[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs41527551	0.93[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4561543	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4597393	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56808255	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57978863	0.84[EUR][1000 genomes]
rs58263042	0.86[AMR][1000 genomes]
rs59211646	0.84[ASN][1000 genomes]
rs595792	0.84[JPT][hapmap]
rs60451418	0.89[EUR][1000 genomes]
rs60928334	0.83[EUR][1000 genomes]
rs638868	0.84[JPT][hapmap];0.81[YRI][hapmap]
rs6506968	0.85[CEU][hapmap];0.80[YRI][hapmap];0.83[EUR][1000 genomes]
rs686196	0.88[JPT][hapmap]
rs7226639	0.82[JPT][hapmap]
rs7228553	0.93[CEU][hapmap];0.93[YRI][hapmap];0.90[EUR][1000 genomes]
rs7229026	0.84[CEU][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs7233422	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7243086	0.83[EUR][1000 genomes]
rs7243481	0.83[EUR][1000 genomes]
rs7243539	0.88[EUR][1000 genomes]
rs7245123	0.93[CEU][hapmap];0.93[YRI][hapmap];0.87[EUR][1000 genomes]
rs72933532	0.83[EUR][1000 genomes]
rs72933545	0.83[EUR][1000 genomes]
rs7359734	0.85[CEU][hapmap];0.80[YRI][hapmap];0.83[EUR][1000 genomes]
rs73958414	0.85[ASN][1000 genomes]
rs73958415	0.84[ASN][1000 genomes]
rs8083848	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs8087781	0.87[EUR][1000 genomes]
rs8091089	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs8093474	0.89[EUR][1000 genomes]
rs8093807	0.83[EUR][1000 genomes]
rs8094914	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs8096329	0.83[EUR][1000 genomes]
rs8097263	0.93[CHB][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs968099	0.88[JPT][hapmap]
rs968177	0.85[CEU][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs968178	0.92[CEU][hapmap];0.81[YRI][hapmap];0.83[EUR][1000 genomes]
rs982521	0.93[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347612	chr18:29975003-29990362	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29963600-29999200	Weak transcription	Fetal Kidney	kidney
2	chr18:29982000-30005400	Weak transcription	Stomach Mucosa	stomach
3	chr18:29985400-29995200	Weak transcription	Pancreas	Pancrea
4	chr18:29987400-29990000	Weak transcription	Gastric	stomach
5	chr18:29987400-29999800	Weak transcription	Brain Angular Gyrus	brain
6	chr18:29987800-29990400	Weak transcription	Ovary	ovary
7	chr18:29987800-29995600	Weak transcription	Brain Hippocampus Middle	brain
8	chr18:29987800-29998200	Weak transcription	Left Ventricle	heart
9	chr18:29988600-29995400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr18:29988800-29990000	Enhancers	Fetal Heart	heart
11	chr18:29988800-29990200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr18:29988800-29995200	Weak transcription	Brain Cingulate Gyrus	brain

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