Variant report

Variant	rs968178
Chromosome Location	chr18:30009282-30009283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10438935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10468833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10468834	0.85[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10468904	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10775451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10853421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11081761	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11081762	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11081763	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11081764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11081765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11662168	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs11665147	0.87[EUR][1000 genomes]
rs11665150	0.87[EUR][1000 genomes]
rs11665190	0.87[EUR][1000 genomes]
rs11874614	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12604457	0.81[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs13380944	0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs13380968	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13381344	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs1350551	0.84[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1380085	0.85[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1458858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1458865	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16963270	0.84[EUR][1000 genomes]
rs16963289	0.87[EUR][1000 genomes]
rs16963381	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17744022	0.82[JPT][hapmap]
rs17744051	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17744064	0.85[ASN][1000 genomes]
rs17744164	0.82[ASN][1000 genomes]
rs17811666	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17811690	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs17811714	0.85[ASN][1000 genomes]
rs17811798	0.85[ASN][1000 genomes]
rs1863605	0.85[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1964517	0.83[EUR][1000 genomes]
rs2034968	0.83[EUR][1000 genomes]
rs2052757	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2055060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2421462	0.92[CEU][hapmap];0.81[YRI][hapmap];0.83[EUR][1000 genomes]
rs41527551	0.83[EUR][1000 genomes]
rs55941037	0.85[ASN][1000 genomes]
rs56808255	0.88[EUR][1000 genomes]
rs57978863	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60451418	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60928334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61311884	0.85[ASN][1000 genomes]
rs6506968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7228553	1.00[CEU][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7229026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7243086	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7243481	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7243539	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7245123	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72933532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72933545	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs729691	0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs729692	0.85[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs729693	0.85[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs7359734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73954814	0.85[ASN][1000 genomes]
rs8083848	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8087581	0.81[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs8087781	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8089997	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs8091089	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8093474	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8093807	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8094711	0.82[ASN][1000 genomes]
rs8094914	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8096329	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8097263	0.83[EUR][1000 genomes]
rs968177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9807749	0.85[ASN][1000 genomes]
rs982521	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30001400-30018400	Weak transcription	Esophagus	oesophagus
2	chr18:30002400-30014800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:30002400-30017200	Weak transcription	Right Atrium	heart
4	chr18:30002400-30018200	Weak transcription	Psoas Muscle	Psoas
5	chr18:30005200-30018200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr18:30005600-30009400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr18:30005600-30009600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr18:30005800-30009400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr18:30005800-30009600	Weak transcription	Brain Anterior Caudate	brain
10	chr18:30005800-30009800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr18:30005800-30010000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr18:30006200-30018200	Weak transcription	Pancreas	Pancrea
13	chr18:30006400-30014200	Weak transcription	Small Intestine	intestine
14	chr18:30006400-30016800	Weak transcription	Brain Angular Gyrus	brain
15	chr18:30007600-30009800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr18:30007600-30017000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr18:30007800-30010600	Weak transcription	Liver	Liver
18	chr18:30008400-30009600	Enhancers	Stomach Mucosa	stomach
19	chr18:30008600-30009800	Weak transcription	Fetal Brain Male	brain
20	chr18:30008600-30010000	Weak transcription	Left Ventricle	heart
21	chr18:30008600-30010600	Weak transcription	Right Ventricle	heart
22	chr18:30008600-30012400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr18:30008600-30017400	Weak transcription	Aorta	Aorta
24	chr18:30008800-30009600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr18:30009000-30009600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr18:30009000-30010000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr18:30009000-30010200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr18:30009000-30010200	Enhancers	Brain Hippocampus Middle	brain
29	chr18:30009200-30009600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr18:30009200-30010000	Enhancers	Brain Substantia Nigra	brain
31	chr18:30009200-30010200	Flanking Active TSS	Fetal Heart	heart

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