Variant report

Variant	rs1863605
Chromosome Location	chr18:30029033-30029034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10048362	0.85[EUR][1000 genomes]
rs10438935	0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs10468833	0.87[ASN][1000 genomes]
rs10468834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10468904	0.84[ASN][1000 genomes]
rs10502596	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs10502599	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs10502600	0.88[CEU][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes]
rs10775451	0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10853421	0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs11081761	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs11081762	0.82[ASN][1000 genomes]
rs11081763	0.84[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs11081764	0.87[ASN][1000 genomes]
rs11081765	0.82[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11662168	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11873325	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs11874614	0.83[ASN][1000 genomes]
rs12604457	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13380944	0.91[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs13380952	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13380968	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13381088	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs13381184	0.88[CEU][hapmap]
rs1350551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1380085	0.91[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs1380086	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs1458858	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs1458865	0.83[ASN][1000 genomes]
rs16963334	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs16963353	0.88[CEU][hapmap]
rs16963365	0.88[CEU][hapmap]
rs16963381	0.91[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs16963382	0.88[CEU][hapmap]
rs17744051	0.85[ASN][1000 genomes]
rs17744064	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17744164	0.89[CHB][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17744182	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs17811666	0.85[ASN][1000 genomes]
rs17811690	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17811714	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17811780	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs17811798	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052757	0.85[ASN][1000 genomes]
rs2055060	0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28500590	0.85[EUR][1000 genomes]
rs3786308	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs3786310	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs3826611	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs55941037	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57978863	0.85[ASN][1000 genomes]
rs59211646	0.85[EUR][1000 genomes]
rs60451418	0.82[ASN][1000 genomes]
rs60928334	0.87[ASN][1000 genomes]
rs61311884	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506968	0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7228553	0.84[ASN][1000 genomes]
rs7229026	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs7243086	0.87[ASN][1000 genomes]
rs7243481	0.87[ASN][1000 genomes]
rs7243539	0.84[ASN][1000 genomes]
rs7245123	0.82[ASN][1000 genomes]
rs72933532	0.85[ASN][1000 genomes]
rs72933545	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs729691	0.91[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs729692	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359734	0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73954814	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73958414	0.85[EUR][1000 genomes]
rs73958415	0.85[EUR][1000 genomes]
rs8083848	0.91[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs8087581	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8087781	0.94[ASN][1000 genomes]
rs8091089	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8093807	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8094711	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8094914	0.86[ASN][1000 genomes]
rs8096329	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs968177	0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs968178	0.85[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs9807749	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs982521	0.91[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30020000-30032000	Weak transcription	Gastric	stomach
2	chr18:30020800-30030600	Weak transcription	Stomach Mucosa	stomach
3	chr18:30022000-30029200	Enhancers	Brain Substantia Nigra	brain
4	chr18:30022800-30030600	Weak transcription	Psoas Muscle	Psoas
5	chr18:30022800-30035400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr18:30023400-30033000	Enhancers	Fetal Heart	heart
7	chr18:30024000-30035200	Weak transcription	Fetal Brain Female	brain
8	chr18:30024200-30044800	Weak transcription	Right Ventricle	heart
9	chr18:30025000-30029200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr18:30025000-30029800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr18:30025000-30041200	Weak transcription	Left Ventricle	heart
12	chr18:30025200-30030600	Weak transcription	Pancreas	Pancrea
13	chr18:30027000-30029600	Weak transcription	Liver	Liver
14	chr18:30027000-30032200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr18:30027000-30033600	Weak transcription	Fetal Brain Male	brain
16	chr18:30027200-30030200	Weak transcription	Brain Anterior Caudate	brain
17	chr18:30027200-30034000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr18:30027200-30045400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr18:30027800-30030400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr18:30027800-30032400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr18:30028000-30029800	Weak transcription	Brain Angular Gyrus	brain
22	chr18:30028200-30030000	Enhancers	Brain Germinal Matrix	brain
23	chr18:30028400-30031800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr18:30028800-30029400	Weak transcription	Fetal Intestine Large	intestine
25	chr18:30028800-30030600	Weak transcription	Small Intestine	intestine
26	chr18:30028800-30030800	Enhancers	Fetal Intestine Small	intestine
27	chr18:30029000-30029200	Enhancers	Brain Hippocampus Middle	brain

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