Variant report

Variant	rs17744182
Chromosome Location	chr18:30032525-30032526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10468834	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs10502593	0.83[EUR][1000 genomes]
rs10502597	0.83[EUR][1000 genomes]
rs10502598	0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10502599	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11661284	0.83[EUR][1000 genomes]
rs11661378	0.83[EUR][1000 genomes]
rs11661767	0.83[EUR][1000 genomes]
rs11664951	0.83[EUR][1000 genomes]
rs11873828	0.83[EUR][1000 genomes]
rs11877881	0.83[EUR][1000 genomes]
rs12052010	0.91[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1350551	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1380086	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17743799	0.83[EUR][1000 genomes]
rs17743907	0.83[EUR][1000 genomes]
rs17744022	0.86[JPT][hapmap]
rs17744057	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17744064	0.81[ASN][1000 genomes]
rs17744164	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs17805881	0.83[EUR][1000 genomes]
rs17805905	0.83[EUR][1000 genomes]
rs17805953	0.83[EUR][1000 genomes]
rs17811420	0.83[EUR][1000 genomes]
rs17811474	0.83[EUR][1000 genomes]
rs17811714	0.81[ASN][1000 genomes]
rs17811780	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17811798	0.81[ASN][1000 genomes]
rs1863605	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs41535045	0.83[EUR][1000 genomes]
rs55941037	0.81[ASN][1000 genomes]
rs61311884	0.81[ASN][1000 genomes]
rs7236302	0.83[EUR][1000 genomes]
rs7237059	0.83[EUR][1000 genomes]
rs7241450	0.83[EUR][1000 genomes]
rs72933552	0.81[ASN][1000 genomes]
rs729692	0.81[ASN][1000 genomes]
rs729693	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs73954814	0.82[ASN][1000 genomes]
rs9807749	0.81[ASN][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
PR interval	25035420	GWAS catalog

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30022800-30035400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr18:30023400-30033000	Enhancers	Fetal Heart	heart
3	chr18:30024000-30035200	Weak transcription	Fetal Brain Female	brain
4	chr18:30024200-30044800	Weak transcription	Right Ventricle	heart
5	chr18:30025000-30041200	Weak transcription	Left Ventricle	heart
6	chr18:30027000-30033600	Weak transcription	Fetal Brain Male	brain
7	chr18:30027200-30034000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr18:30027200-30045400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr18:30029800-30032800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr18:30029800-30037000	Enhancers	Brain Angular Gyrus	brain
11	chr18:30030400-30037400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr18:30030800-30032600	Enhancers	Liver	Liver
13	chr18:30030800-30033400	Weak transcription	Brain Anterior Caudate	brain
14	chr18:30030800-30034400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr18:30030800-30034400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr18:30030800-30039200	Weak transcription	Fetal Intestine Small	intestine
17	chr18:30031000-30034600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr18:30031200-30033400	Weak transcription	Pancreas	Pancrea
19	chr18:30031200-30037400	Weak transcription	Psoas Muscle	Psoas
20	chr18:30031200-30048400	Weak transcription	Fetal Muscle Leg	muscle
21	chr18:30031400-30048200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr18:30031800-30046800	Weak transcription	Stomach Mucosa	stomach
23	chr18:30032000-30032600	Enhancers	Brain Hippocampus Middle	brain
24	chr18:30032200-30032800	Enhancers	Fetal Intestine Large	intestine
25	chr18:30032200-30037000	Enhancers	Brain Substantia Nigra	brain
26	chr18:30032400-30032600	Enhancers	Fetal Kidney	kidney
27	chr18:30032400-30032600	Enhancers	HSMMtube	muscle
28	chr18:30032400-30034600	Weak transcription	Adipose Nuclei	Adipose
29	chr18:30032400-30035800	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links