Variant report

Variant	rs11661767
Chromosome Location	chr18:29950272-29950273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29949594..29952442-chr18:30047301..30050702,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141441	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10502593	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10502597	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10502598	0.90[EUR][1000 genomes]
rs10502599	0.86[EUR][1000 genomes]
rs11661284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11661378	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11661757	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11664951	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11873828	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11877846	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11877881	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12052010	0.86[EUR][1000 genomes]
rs1380086	0.86[EUR][1000 genomes]
rs1689031	0.81[ASN][1000 genomes]
rs16963184	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17743799	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17743907	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17744182	0.83[EUR][1000 genomes]
rs17805881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17805905	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17805953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17811420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17811474	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17811780	0.86[EUR][1000 genomes]
rs41535045	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7236302	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7237059	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7241450	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29926800-29951000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr18:29930200-29953600	Weak transcription	Fetal Muscle Leg	muscle
3	chr18:29932800-29954000	Weak transcription	Ovary	ovary
4	chr18:29937600-29952600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:29939000-29951000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr18:29939000-29952800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:29946200-29951000	Weak transcription	Lung	lung
8	chr18:29946200-29958200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr18:29946800-29951000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr18:29946800-29953600	Weak transcription	Colon Smooth Muscle	Colon
11	chr18:29946800-29959000	Weak transcription	Fetal Lung	lung
12	chr18:29947000-29951400	Weak transcription	Adipose Nuclei	Adipose
13	chr18:29947000-29951400	Weak transcription	HSMM	muscle
14	chr18:29947000-29952400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr18:29947000-29953800	Weak transcription	Fetal Kidney	kidney
16	chr18:29947200-29957200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr18:29947400-29951200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr18:29947600-29951800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr18:29947800-29951000	Weak transcription	Psoas Muscle	Psoas
20	chr18:29947800-29951200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr18:29948200-29951400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr18:29948200-29951600	Weak transcription	Right Ventricle	heart
23	chr18:29948200-29953400	Weak transcription	Gastric	stomach
24	chr18:29948200-29954000	Weak transcription	Aorta	Aorta
25	chr18:29948200-29954200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr18:29948400-29951000	Weak transcription	Placenta	Placenta
27	chr18:29948400-29951000	Weak transcription	Left Ventricle	heart
28	chr18:29948400-29951000	Weak transcription	Pancreas	Pancrea
29	chr18:29948400-29951000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr18:29948400-29952400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr18:29948400-29952600	Weak transcription	Right Atrium	heart
32	chr18:29948400-29954200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr18:29948600-29951400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr18:29948600-29951600	Weak transcription	Fetal Intestine Large	intestine
35	chr18:29948600-29952000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr18:29948600-29952400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr18:29948600-29953600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr18:29948800-29950800	Weak transcription	Stomach Mucosa	stomach
39	chr18:29948800-29951400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr18:29948800-29951400	Weak transcription	Fetal Intestine Small	intestine
41	chr18:29948800-29951400	Weak transcription	HMEC	breast
42	chr18:29948800-29951400	Weak transcription	NHEK	skin
43	chr18:29948800-29951600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr18:29948800-29952200	Weak transcription	Brain Anterior Caudate	brain
45	chr18:29949000-29951800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr18:29949200-29950800	Weak transcription	Hela-S3	cervix
47	chr18:29949200-29951000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr18:29949200-29951000	Weak transcription	Liver	Liver
49	chr18:29949200-29951600	Weak transcription	Brain Substantia Nigra	brain
50	chr18:29949200-29952400	Weak transcription	Brain Angular Gyrus	brain

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