Variant report

Variant	rs10502593
Chromosome Location	chr18:29966528-29966529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29962611..29966946-chr18:30048395..30051891,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141441	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10502597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10502598	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10502599	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11660076	1.00[CEU][hapmap]
rs11661284	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11661378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11661757	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11661767	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11663076	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs11664951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11665544	1.00[CEU][hapmap]
rs11873828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11873865	0.83[JPT][hapmap]
rs11877846	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11877881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12052010	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1380086	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1458861	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs16962924	1.00[CEU][hapmap]
rs16962941	1.00[CEU][hapmap]
rs16962953	1.00[CEU][hapmap]
rs16962965	1.00[CEU][hapmap]
rs16962971	1.00[CEU][hapmap]
rs16962974	1.00[CEU][hapmap]
rs16962977	1.00[CEU][hapmap]
rs16963129	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs16963184	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17743799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17743907	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17744164	1.00[CEU][hapmap]
rs17744182	0.83[EUR][1000 genomes]
rs17805881	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17805905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17805953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17811420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17811474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17811780	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs41535045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4462681	1.00[CEU][hapmap]
rs7236302	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7237059	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7241450	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7243963	1.00[CEU][hapmap]
rs8086990	1.00[CEU][hapmap]
rs9953127	1.00[CEU][hapmap]
rs9960751	1.00[CEU][hapmap]
rs9962307	1.00[CEU][hapmap]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29952800-29973200	Weak transcription	Fetal Stomach	stomach
2	chr18:29953000-29966600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr18:29953400-29966600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr18:29954000-29974000	Weak transcription	HSMMtube	muscle
5	chr18:29954200-29970800	Weak transcription	Fetal Intestine Large	intestine
6	chr18:29954200-29974400	Weak transcription	Fetal Muscle Leg	muscle
7	chr18:29954400-29972600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr18:29954600-29974200	Weak transcription	Fetal Intestine Small	intestine
9	chr18:29955800-29971000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr18:29959200-29972600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr18:29959200-29975400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr18:29960800-29969800	Weak transcription	Small Intestine	intestine
13	chr18:29962800-29972800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr18:29962800-29972800	Weak transcription	Gastric	stomach
15	chr18:29962800-29974000	Weak transcription	Left Ventricle	heart
16	chr18:29963000-29967000	Enhancers	Fetal Heart	heart
17	chr18:29963400-29969800	Weak transcription	Pancreas	Pancrea
18	chr18:29963600-29966600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr18:29963600-29971200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr18:29963600-29976200	Weak transcription	Aorta	Aorta
21	chr18:29963600-29999200	Weak transcription	Fetal Kidney	kidney
22	chr18:29963800-29971200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr18:29964200-29974000	Weak transcription	Ovary	ovary
24	chr18:29964800-29985400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr18:29965200-29966600	Enhancers	Brain Cingulate Gyrus	brain
26	chr18:29965200-29968600	Enhancers	Fetal Brain Male	brain
27	chr18:29965400-29967000	Enhancers	Brain Hippocampus Middle	brain
28	chr18:29965400-29967000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr18:29965600-29966600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr18:29965600-29966600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr18:29965600-29966800	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr18:29965600-29966800	Enhancers	Right Ventricle	heart
33	chr18:29965600-29972800	Weak transcription	Esophagus	oesophagus
34	chr18:29965800-29966600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr18:29965800-29971400	Weak transcription	Adipose Nuclei	Adipose
36	chr18:29965800-29974000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr18:29966000-29966600	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr18:29966000-29967000	Enhancers	Brain Anterior Caudate	brain
39	chr18:29966200-29966800	Enhancers	Fetal Brain Female	brain
40	chr18:29966200-29967000	Enhancers	Brain Angular Gyrus	brain
41	chr18:29966200-29967000	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr18:29966200-29967000	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr18:29966200-29967400	Enhancers	Brain Substantia Nigra	brain
44	chr18:29966200-29969400	Weak transcription	Stomach Mucosa	stomach
45	chr18:29966400-29967400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr18:29966400-29973200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr18:29966400-29974000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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