Variant report

Variant	rs17811798
Chromosome Location	chr18:30030682-30030683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30017894..30019395-chr18:30030644..30032301,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10048362	0.85[EUR][1000 genomes]
rs10438935	0.87[ASN][1000 genomes]
rs10468833	0.87[ASN][1000 genomes]
rs10468834	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10468904	0.84[ASN][1000 genomes]
rs10502596	0.85[EUR][1000 genomes]
rs10502599	0.81[ASN][1000 genomes]
rs10775451	0.85[ASN][1000 genomes]
rs10853421	0.87[ASN][1000 genomes]
rs11081761	0.81[ASN][1000 genomes]
rs11081762	0.82[ASN][1000 genomes]
rs11081763	0.87[ASN][1000 genomes]
rs11081764	0.87[ASN][1000 genomes]
rs11081765	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11662168	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11873325	0.85[EUR][1000 genomes]
rs11874614	0.83[ASN][1000 genomes]
rs12604457	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13380944	0.94[ASN][1000 genomes]
rs13380952	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13380968	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13381088	0.85[EUR][1000 genomes]
rs1350551	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1380085	0.91[ASN][1000 genomes]
rs1380086	0.81[ASN][1000 genomes]
rs1458858	0.87[ASN][1000 genomes]
rs1458865	0.83[ASN][1000 genomes]
rs16963334	0.85[EUR][1000 genomes]
rs16963381	0.94[ASN][1000 genomes]
rs17744051	0.85[ASN][1000 genomes]
rs17744064	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17744164	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17744182	0.81[ASN][1000 genomes]
rs17811666	0.85[ASN][1000 genomes]
rs17811690	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17811714	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17811780	0.81[ASN][1000 genomes]
rs1863605	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052757	0.85[ASN][1000 genomes]
rs2055060	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28500590	0.85[EUR][1000 genomes]
rs3786308	0.85[EUR][1000 genomes]
rs3786310	0.85[EUR][1000 genomes]
rs3826611	0.85[EUR][1000 genomes]
rs55941037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57978863	0.85[ASN][1000 genomes]
rs59211646	0.85[EUR][1000 genomes]
rs60451418	0.82[ASN][1000 genomes]
rs60928334	0.87[ASN][1000 genomes]
rs61311884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506968	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7228553	0.84[ASN][1000 genomes]
rs7229026	0.87[ASN][1000 genomes]
rs7243086	0.87[ASN][1000 genomes]
rs7243481	0.87[ASN][1000 genomes]
rs7243539	0.84[ASN][1000 genomes]
rs7245123	0.82[ASN][1000 genomes]
rs72933532	0.85[ASN][1000 genomes]
rs72933545	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs729691	0.91[ASN][1000 genomes]
rs729692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359734	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73954814	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73958414	0.85[EUR][1000 genomes]
rs73958415	0.85[EUR][1000 genomes]
rs8083848	0.94[ASN][1000 genomes]
rs8087581	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8087781	0.94[ASN][1000 genomes]
rs8091089	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8093807	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8094711	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8094914	0.86[ASN][1000 genomes]
rs8096329	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs968177	0.85[ASN][1000 genomes]
rs968178	0.85[ASN][1000 genomes]
rs9807749	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs982521	0.94[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30020000-30032000	Weak transcription	Gastric	stomach
2	chr18:30022800-30035400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr18:30023400-30033000	Enhancers	Fetal Heart	heart
4	chr18:30024000-30035200	Weak transcription	Fetal Brain Female	brain
5	chr18:30024200-30044800	Weak transcription	Right Ventricle	heart
6	chr18:30025000-30041200	Weak transcription	Left Ventricle	heart
7	chr18:30027000-30032200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr18:30027000-30033600	Weak transcription	Fetal Brain Male	brain
9	chr18:30027200-30034000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr18:30027200-30045400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr18:30027800-30032400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr18:30028400-30031800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr18:30028800-30030800	Enhancers	Fetal Intestine Small	intestine
14	chr18:30029800-30030800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr18:30029800-30032800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr18:30029800-30037000	Enhancers	Brain Angular Gyrus	brain
17	chr18:30030000-30030800	Flanking Active TSS	Liver	Liver
18	chr18:30030000-30031000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr18:30030000-30032200	Weak transcription	Fetal Intestine Large	intestine
20	chr18:30030200-30030800	Enhancers	Brain Anterior Caudate	brain
21	chr18:30030400-30030800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr18:30030400-30031600	Enhancers	Brain Hippocampus Middle	brain
23	chr18:30030400-30037400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr18:30030600-30030800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr18:30030600-30031000	Enhancers	Small Intestine	intestine
26	chr18:30030600-30031200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr18:30030600-30031200	Enhancers	Pancreas	Pancrea
28	chr18:30030600-30031200	Enhancers	Psoas Muscle	Psoas
29	chr18:30030600-30031800	Enhancers	Brain Substantia Nigra	brain
30	chr18:30030600-30031800	Enhancers	Stomach Mucosa	stomach

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