Variant report

Variant	rs7243539
Chromosome Location	chr18:30007510-30007511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10438935	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10468833	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10468834	0.84[ASN][1000 genomes]
rs10468904	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10775451	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10853421	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11081761	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11081762	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11081763	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11081764	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11081765	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11662168	0.87[ASN][1000 genomes]
rs11874614	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12604457	0.87[ASN][1000 genomes]
rs13380944	0.90[ASN][1000 genomes]
rs13380968	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13381344	0.80[EUR][1000 genomes]
rs1350551	0.84[ASN][1000 genomes]
rs1380085	0.86[ASN][1000 genomes]
rs1458858	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1458865	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16963270	0.82[EUR][1000 genomes]
rs16963381	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17744051	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17744064	0.84[ASN][1000 genomes]
rs17744164	0.87[ASN][1000 genomes]
rs17811666	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17811690	0.87[ASN][1000 genomes]
rs17811714	0.84[ASN][1000 genomes]
rs17811798	0.84[ASN][1000 genomes]
rs1863605	0.84[ASN][1000 genomes]
rs1964517	0.81[EUR][1000 genomes]
rs2034968	0.81[EUR][1000 genomes]
rs2052757	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2055060	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421462	0.88[EUR][1000 genomes]
rs41527551	0.81[EUR][1000 genomes]
rs4561543	0.81[EUR][1000 genomes]
rs4597393	0.83[EUR][1000 genomes]
rs55941037	0.84[ASN][1000 genomes]
rs57978863	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60451418	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60928334	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61311884	0.84[ASN][1000 genomes]
rs6506968	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7228553	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7229026	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7233422	0.82[EUR][1000 genomes]
rs7243086	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7243481	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7245123	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72933532	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72933545	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs729691	0.86[ASN][1000 genomes]
rs729692	0.84[ASN][1000 genomes]
rs729693	0.84[ASN][1000 genomes]
rs7359734	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73954814	0.83[ASN][1000 genomes]
rs8083848	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8087581	0.87[ASN][1000 genomes]
rs8087781	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8091089	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8093474	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8093807	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8094711	0.87[ASN][1000 genomes]
rs8094914	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8096329	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8097263	0.81[EUR][1000 genomes]
rs968177	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs968178	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9807749	0.84[ASN][1000 genomes]
rs982521	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30001400-30018400	Weak transcription	Esophagus	oesophagus
2	chr18:30002000-30008600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr18:30002400-30014800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr18:30002400-30017200	Weak transcription	Right Atrium	heart
5	chr18:30002400-30018200	Weak transcription	Psoas Muscle	Psoas
6	chr18:30004600-30008600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr18:30004800-30008400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr18:30005200-30018200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr18:30005400-30007600	Enhancers	Stomach Mucosa	stomach
10	chr18:30005400-30007800	Enhancers	HepG2	liver
11	chr18:30005600-30008200	Weak transcription	Fetal Brain Male	brain
12	chr18:30005600-30008200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr18:30005600-30009000	Weak transcription	Brain Hippocampus Middle	brain
14	chr18:30005600-30009400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr18:30005600-30009600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr18:30005800-30009200	Enhancers	Fetal Heart	heart
17	chr18:30005800-30009400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr18:30005800-30009600	Weak transcription	Brain Anterior Caudate	brain
19	chr18:30005800-30009800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr18:30005800-30010000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr18:30006000-30008600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr18:30006200-30018200	Weak transcription	Pancreas	Pancrea
23	chr18:30006400-30014200	Weak transcription	Small Intestine	intestine
24	chr18:30006400-30016800	Weak transcription	Brain Angular Gyrus	brain
25	chr18:30006800-30007800	Enhancers	Liver	Liver
26	chr18:30007000-30007600	Enhancers	Rectal Smooth Muscle	rectum
27	chr18:30007200-30007800	Enhancers	A549	lung
28	chr18:30007200-30007800	Enhancers	NH-A	brain
29	chr18:30007400-30007600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr18:30007400-30007600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr18:30007400-30007600	Enhancers	Aorta	Aorta
32	chr18:30007400-30007600	Enhancers	Brain Substantia Nigra	brain
33	chr18:30007400-30007600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr18:30007400-30007600	Enhancers	Fetal Intestine Small	intestine
35	chr18:30007400-30007600	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr18:30007400-30007600	Enhancers	Fetal Lung	lung
37	chr18:30007400-30007600	Enhancers	Left Ventricle	heart
38	chr18:30007400-30007600	Enhancers	Ovary	ovary
39	chr18:30007400-30007600	Flanking Active TSS	HSMM	muscle
40	chr18:30007400-30007600	Enhancers	Osteobl	bone
41	chr18:30007400-30007800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr18:30007400-30007800	Enhancers	Right Ventricle	heart
43	chr18:30007400-30008200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr18:30007400-30008200	Enhancers	Hela-S3	cervix
45	chr18:30007400-30008400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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