Variant report

Variant	rs13380968
Chromosome Location	chr18:30018384-30018385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30017894..30019395-chr18:30030644..30032301,2	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10438935	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10468833	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10468834	0.88[CEU][hapmap];0.89[ASN][1000 genomes]
rs10468904	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10502591	0.86[CEU][hapmap]
rs10502594	0.86[CEU][hapmap]
rs10502600	1.00[CEU][hapmap]
rs10775451	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10853420	0.86[CEU][hapmap]
rs10853421	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11081761	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11081762	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11081763	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11081764	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11081765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11662168	0.85[ASN][1000 genomes]
rs11665147	0.87[EUR][1000 genomes]
rs11665150	0.87[EUR][1000 genomes]
rs11665190	0.87[EUR][1000 genomes]
rs11872355	0.87[CEU][hapmap]
rs11874614	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12604457	0.85[ASN][1000 genomes]
rs13380944	0.88[ASN][1000 genomes]
rs13381184	1.00[CEU][hapmap]
rs13381344	0.90[EUR][1000 genomes]
rs1350551	0.88[CEU][hapmap];0.89[ASN][1000 genomes]
rs1380085	0.84[ASN][1000 genomes]
rs1458858	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1458865	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16963270	0.84[EUR][1000 genomes]
rs16963289	0.87[EUR][1000 genomes]
rs16963314	0.86[CEU][hapmap]
rs16963353	1.00[CEU][hapmap]
rs16963365	1.00[CEU][hapmap]
rs16963381	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16963382	1.00[CEU][hapmap]
rs17736489	0.87[CEU][hapmap]
rs17744051	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17744064	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17744164	0.85[ASN][1000 genomes]
rs17811666	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17811690	0.85[ASN][1000 genomes]
rs17811714	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17811798	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1863605	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1964517	0.83[EUR][1000 genomes]
rs2034968	0.83[EUR][1000 genomes]
rs2052757	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2055060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421462	0.83[EUR][1000 genomes]
rs41527551	0.83[EUR][1000 genomes]
rs55941037	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56808255	0.88[EUR][1000 genomes]
rs57978863	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60451418	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60928334	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61311884	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6506968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7228553	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7229026	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7243086	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7243481	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7243539	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7245123	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72933532	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72933545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs729691	0.84[ASN][1000 genomes]
rs729692	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs729693	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7359734	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73954814	0.88[ASN][1000 genomes]
rs8083848	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8087581	0.85[ASN][1000 genomes]
rs8087781	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8091089	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8093474	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8093807	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8094711	0.85[ASN][1000 genomes]
rs8094914	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8096329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8097263	0.83[EUR][1000 genomes]
rs968177	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs968178	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9807749	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs982521	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30001400-30018400	Weak transcription	Esophagus	oesophagus
2	chr18:30011000-30018400	Weak transcription	Right Ventricle	heart
3	chr18:30012800-30021800	Enhancers	Fetal Heart	heart
4	chr18:30015000-30018600	Enhancers	Liver	Liver
5	chr18:30015600-30020400	Enhancers	Brain Hippocampus Middle	brain
6	chr18:30015800-30021200	Weak transcription	Fetal Lung	lung
7	chr18:30016000-30019400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr18:30016400-30019800	Weak transcription	Adipose Nuclei	Adipose
9	chr18:30016600-30019000	Enhancers	Stomach Smooth Muscle	stomach
10	chr18:30016800-30020000	Enhancers	Brain Angular Gyrus	brain
11	chr18:30016800-30020800	Enhancers	Brain Substantia Nigra	brain
12	chr18:30017000-30020400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr18:30017000-30020600	Enhancers	Brain Cingulate Gyrus	brain
14	chr18:30017000-30021600	Enhancers	Fetal Brain Male	brain
15	chr18:30017200-30019000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr18:30017200-30021200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr18:30017400-30018800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr18:30017400-30019600	Weak transcription	Fetal Brain Female	brain
19	chr18:30017600-30018400	Weak transcription	Right Atrium	heart
20	chr18:30017600-30018800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr18:30017600-30018800	Weak transcription	Brain Anterior Caudate	brain
22	chr18:30017600-30021600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr18:30017800-30018400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr18:30018000-30018600	Enhancers	Lung	lung
25	chr18:30018000-30019600	Enhancers	Aorta	Aorta
26	chr18:30018000-30021400	Weak transcription	Colon Smooth Muscle	Colon
27	chr18:30018200-30018400	Enhancers	Fetal Kidney	kidney
28	chr18:30018200-30018600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr18:30018200-30018600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr18:30018200-30018600	Enhancers	Fetal Muscle Trunk	muscle
31	chr18:30018200-30018600	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr18:30018200-30018800	Weak transcription	Small Intestine	intestine
33	chr18:30018200-30019000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr18:30018200-30019000	Enhancers	Ovary	ovary
35	chr18:30018200-30019000	Enhancers	Pancreas	Pancrea
36	chr18:30018200-30019000	Enhancers	Psoas Muscle	Psoas
37	chr18:30018200-30019200	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr18:30018200-30019200	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr18:30018200-30019400	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr18:30018200-30020000	Enhancers	Gastric	stomach
41	chr18:30018200-30020000	Enhancers	Left Ventricle	heart
42	chr18:30018200-30020800	Enhancers	Stomach Mucosa	stomach
43	chr18:30018200-30021800	Weak transcription	Fetal Intestine Small	intestine

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