Variant report

Variant	rs13381184
Chromosome Location	chr18:30016502-30016503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10468834	0.88[CEU][hapmap]
rs10502591	0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs10502594	0.87[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10502600	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10853420	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11081757	1.00[CHB][hapmap]
rs11504783	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11504784	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11872355	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11872811	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11874036	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11876823	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13380968	1.00[CEU][hapmap]
rs1350551	0.88[CEU][hapmap]
rs16963314	0.86[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16963351	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963353	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16963360	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16963365	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16963373	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16963382	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17736440	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs17736489	0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs1841119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1863605	0.88[CEU][hapmap]
rs3073261	0.83[EUR][1000 genomes]
rs4644922	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55730180	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58220828	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59630704	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60214917	0.83[EUR][1000 genomes]
rs619154	0.82[CHB][hapmap]
rs729692	0.88[CEU][hapmap]
rs729693	0.88[CEU][hapmap]
rs73954805	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73954806	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73954807	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956890	0.83[EUR][1000 genomes]
rs73956898	0.83[EUR][1000 genomes]
rs73958413	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73958418	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73958422	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30001400-30018400	Weak transcription	Esophagus	oesophagus
2	chr18:30002400-30017200	Weak transcription	Right Atrium	heart
3	chr18:30002400-30018200	Weak transcription	Psoas Muscle	Psoas
4	chr18:30005200-30018200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr18:30006200-30018200	Weak transcription	Pancreas	Pancrea
6	chr18:30006400-30016800	Weak transcription	Brain Angular Gyrus	brain
7	chr18:30007600-30017000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr18:30008600-30017400	Weak transcription	Aorta	Aorta
9	chr18:30010800-30017000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr18:30010800-30018200	Weak transcription	Left Ventricle	heart
11	chr18:30011000-30018400	Weak transcription	Right Ventricle	heart
12	chr18:30011200-30017200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr18:30012800-30021800	Enhancers	Fetal Heart	heart
14	chr18:30014600-30016600	Enhancers	Stomach Mucosa	stomach
15	chr18:30014600-30017600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr18:30014600-30018000	Weak transcription	Small Intestine	intestine
17	chr18:30014800-30017000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr18:30015000-30018200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr18:30015000-30018600	Enhancers	Liver	Liver
20	chr18:30015200-30017800	Enhancers	Fetal Intestine Large	intestine
21	chr18:30015400-30016800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr18:30015600-30017800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr18:30015600-30018200	Enhancers	Fetal Intestine Small	intestine
24	chr18:30015600-30020400	Enhancers	Brain Hippocampus Middle	brain
25	chr18:30015800-30017200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr18:30015800-30021200	Weak transcription	Fetal Lung	lung
27	chr18:30016000-30016600	Weak transcription	Brain Anterior Caudate	brain
28	chr18:30016000-30019400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr18:30016200-30018000	Enhancers	Colon Smooth Muscle	Colon
30	chr18:30016400-30019800	Weak transcription	Adipose Nuclei	Adipose

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