Variant report

Variant	rs3073261
Chromosome Location	chr18:29939919-29939920
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10502591	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10502594	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853420	0.85[EUR][1000 genomes]
rs11081757	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11504784	0.81[EUR][1000 genomes]
rs11872355	0.85[EUR][1000 genomes]
rs11872811	0.86[EUR][1000 genomes]
rs11874036	0.86[EUR][1000 genomes]
rs11876823	0.86[EUR][1000 genomes]
rs13381184	0.83[EUR][1000 genomes]
rs16963314	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963351	0.85[EUR][1000 genomes]
rs16963353	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963360	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963365	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17736440	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17736489	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1841119	0.86[EUR][1000 genomes]
rs55730180	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55861080	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55976613	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57230958	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57546420	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58220828	0.85[EUR][1000 genomes]
rs58435646	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58863502	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59340191	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59452754	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59630704	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60154857	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60214917	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60949633	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73954805	0.83[EUR][1000 genomes]
rs73954806	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73954807	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73956875	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73956877	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73956878	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73956881	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73956882	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73956890	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73956898	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958413	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958418	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958422	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29926800-29951000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr18:29930000-29947600	Weak transcription	Esophagus	oesophagus
3	chr18:29930200-29945400	Weak transcription	Fetal Intestine Small	intestine
4	chr18:29930200-29945600	Weak transcription	Fetal Intestine Large	intestine
5	chr18:29930200-29953600	Weak transcription	Fetal Muscle Leg	muscle
6	chr18:29931200-29948000	Weak transcription	Brain Angular Gyrus	brain
7	chr18:29931400-29940400	Weak transcription	Brain Substantia Nigra	brain
8	chr18:29931600-29942000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr18:29932600-29943600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr18:29932800-29954000	Weak transcription	Ovary	ovary
11	chr18:29933000-29948000	Weak transcription	Brain Hippocampus Middle	brain
12	chr18:29934800-29945600	Weak transcription	Aorta	Aorta
13	chr18:29936200-29942000	Weak transcription	HSMM	muscle
14	chr18:29936400-29940600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr18:29936400-29942000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr18:29936800-29940000	Enhancers	Pancreas	Pancrea
17	chr18:29936800-29942400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr18:29937000-29946200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr18:29937600-29952600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr18:29938000-29941800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr18:29938200-29948000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr18:29938400-29945600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr18:29938400-29947600	Weak transcription	Gastric	stomach
24	chr18:29939000-29942600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr18:29939000-29942600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr18:29939000-29945600	Weak transcription	Lung	lung
27	chr18:29939000-29947600	Weak transcription	Left Ventricle	heart
28	chr18:29939000-29948000	Weak transcription	Right Atrium	heart
29	chr18:29939000-29951000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr18:29939000-29952800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr18:29939400-29940000	Weak transcription	Liver	Liver
32	chr18:29939800-29941000	Weak transcription	Stomach Mucosa	stomach
33	chr18:29939800-29944000	Weak transcription	Fetal Stomach	stomach
34	chr18:29939800-29947400	Weak transcription	Fetal Heart	heart

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