The 2.0 version of rSNPBase

Variant report

Variant rs57546420
Chromosome Location chr18:29892583-29892584
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:29868200-29923800 Weak transcription Gastric stomach
2 chr18:29878400-29896000 Weak transcription Brain Anterior Caudate brain
3 chr18:29880800-29897000 Weak transcription Lung lung
4 chr18:29883000-29895800 Weak transcription Stomach Mucosa stomach
5 chr18:29883000-29897000 Weak transcription Fetal Intestine Small intestine
6 chr18:29883000-29897000 Weak transcription Left Ventricle heart
7 chr18:29883400-29896800 Weak transcription Skeletal Muscle Female skeletal muscle
8 chr18:29883800-29893000 Weak transcription Fetal Heart heart
9 chr18:29889200-29893000 Weak transcription Small Intestine intestine
10 chr18:29889200-29896800 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr18:29889400-29892600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr18:29889400-29895600 Weak transcription HSMM muscle
13 chr18:29889400-29895800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr18:29889400-29896200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr18:29889400-29896400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr18:29889400-29896400 Weak transcription Aorta Aorta
17 chr18:29889400-29904200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr18:29889600-29895600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr18:29890200-29898800 Weak transcription Liver Liver
20 chr18:29890200-29902200 Weak transcription Spleen Spleen
21 chr18:29890400-29895600 Weak transcription Muscle Satellite Cultured Cells --
22 chr18:29890400-29895800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr18:29890400-29895800 Weak transcription Brain Cingulate Gyrus brain
24 chr18:29890400-29897000 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr18:29890400-29897000 Weak transcription NH-A brain
26 chr18:29890400-29904000 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr18:29890800-29896800 Weak transcription Fetal Stomach stomach
28 chr18:29891000-29892600 Weak transcription Ovary ovary
29 chr18:29891000-29896400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr18:29891000-29896800 Weak transcription Brain Angular Gyrus brain
31 chr18:29891000-29897400 Weak transcription Fetal Kidney kidney
32 chr18:29891000-29898400 Weak transcription Stomach Smooth Muscle stomach
33 chr18:29891000-29905800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr18:29891000-29914000 Weak transcription Fetal Brain Female brain
35 chr18:29891200-29896800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr18:29891200-29905600 Weak transcription Rectal Smooth Muscle rectum
37 chr18:29891600-29892800 Enhancers Right Ventricle heart
38 chr18:29891600-29896000 Weak transcription Brain Substantia Nigra brain
39 chr18:29891800-29896400 Weak transcription Fetal Muscle Trunk muscle
40 chr18:29892000-29893200 Enhancers Fetal Adrenal Gland Adrenal Gland
41 chr18:29892000-29893400 Enhancers Pancreas Pancrea
42 chr18:29892200-29893200 Enhancers Brain Hippocampus Middle brain
43 chr18:29892200-29896600 Weak transcription Adipose Nuclei Adipose
44 chr18:29892400-29893200 Enhancers Fetal Muscle Leg muscle
45 chr18:29892400-29893400 Enhancers Brain Inferior Temporal Lobe brain
46 chr18:29892400-29897000 Weak transcription Fetal Intestine Large intestine

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Last update: Aug 31, 2015