The 2.0 version of rSNPBase

Variant report

Variant rs58863502
Chromosome Location chr18:29892360-29892361
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:29868200-29923800 Weak transcription Gastric stomach
2 chr18:29878400-29896000 Weak transcription Brain Anterior Caudate brain
3 chr18:29880800-29897000 Weak transcription Lung lung
4 chr18:29883000-29895800 Weak transcription Stomach Mucosa stomach
5 chr18:29883000-29897000 Weak transcription Fetal Intestine Small intestine
6 chr18:29883000-29897000 Weak transcription Left Ventricle heart
7 chr18:29883400-29896800 Weak transcription Skeletal Muscle Female skeletal muscle
8 chr18:29883800-29893000 Weak transcription Fetal Heart heart
9 chr18:29889200-29892400 Weak transcription Brain Inferior Temporal Lobe brain
10 chr18:29889200-29893000 Weak transcription Small Intestine intestine
11 chr18:29889200-29896800 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr18:29889400-29892600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr18:29889400-29895600 Weak transcription HSMM muscle
14 chr18:29889400-29895800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr18:29889400-29896200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr18:29889400-29896400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr18:29889400-29896400 Weak transcription Aorta Aorta
18 chr18:29889400-29904200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr18:29889600-29895600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr18:29890200-29898800 Weak transcription Liver Liver
21 chr18:29890200-29902200 Weak transcription Spleen Spleen
22 chr18:29890400-29895600 Weak transcription Muscle Satellite Cultured Cells --
23 chr18:29890400-29895800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr18:29890400-29895800 Weak transcription Brain Cingulate Gyrus brain
25 chr18:29890400-29897000 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr18:29890400-29897000 Weak transcription NH-A brain
27 chr18:29890400-29904000 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr18:29890800-29896800 Weak transcription Fetal Stomach stomach
29 chr18:29891000-29892600 Weak transcription Ovary ovary
30 chr18:29891000-29896400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr18:29891000-29896800 Weak transcription Brain Angular Gyrus brain
32 chr18:29891000-29897400 Weak transcription Fetal Kidney kidney
33 chr18:29891000-29898400 Weak transcription Stomach Smooth Muscle stomach
34 chr18:29891000-29905800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
35 chr18:29891000-29914000 Weak transcription Fetal Brain Female brain
36 chr18:29891200-29896800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr18:29891200-29905600 Weak transcription Rectal Smooth Muscle rectum
38 chr18:29891600-29892400 Strong transcription Fetal Intestine Large intestine
39 chr18:29891600-29892400 Genic enhancers Fetal Muscle Leg muscle
40 chr18:29891600-29892800 Enhancers Right Ventricle heart
41 chr18:29891600-29896000 Weak transcription Brain Substantia Nigra brain
42 chr18:29891800-29896400 Weak transcription Fetal Muscle Trunk muscle
43 chr18:29892000-29893200 Enhancers Fetal Adrenal Gland Adrenal Gland
44 chr18:29892000-29893400 Enhancers Pancreas Pancrea
45 chr18:29892200-29892400 Active TSS Sigmoid Colon Sigmoid Colon
46 chr18:29892200-29893200 Enhancers Brain Hippocampus Middle brain
47 chr18:29892200-29896600 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015