Variant report

Variant	rs73958418
Chromosome Location	chr18:29987767-29987768
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10502591	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10502594	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10502600	0.86[EUR][1000 genomes]
rs10853420	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11081757	0.84[ASN][1000 genomes]
rs11504783	0.85[EUR][1000 genomes]
rs11504784	0.96[EUR][1000 genomes]
rs11872355	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13381184	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16963314	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963351	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16963353	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963360	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963365	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963373	0.90[EUR][1000 genomes]
rs16963382	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17736440	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17736489	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3073261	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644922	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55730180	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55861080	0.84[ASN][1000 genomes]
rs55976613	0.84[ASN][1000 genomes]
rs57230958	0.84[ASN][1000 genomes]
rs57546420	0.84[ASN][1000 genomes]
rs58220828	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58435646	0.84[ASN][1000 genomes]
rs58863502	0.84[ASN][1000 genomes]
rs59340191	0.84[ASN][1000 genomes]
rs59452754	0.84[ASN][1000 genomes]
rs59630704	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60154857	0.84[ASN][1000 genomes]
rs60214917	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60949633	0.84[ASN][1000 genomes]
rs73954805	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73954806	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73954807	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73956875	0.84[ASN][1000 genomes]
rs73956877	0.84[ASN][1000 genomes]
rs73956878	0.84[ASN][1000 genomes]
rs73956881	0.88[ASN][1000 genomes]
rs73956882	0.88[ASN][1000 genomes]
rs73956890	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73956898	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958413	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958422	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347612	chr18:29975003-29990362	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29963600-29999200	Weak transcription	Fetal Kidney	kidney
2	chr18:29982000-30005400	Weak transcription	Stomach Mucosa	stomach
3	chr18:29985400-29995200	Weak transcription	Pancreas	Pancrea
4	chr18:29986000-29988400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr18:29987000-29987800	Enhancers	Brain Cingulate Gyrus	brain
6	chr18:29987000-29988000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr18:29987200-29987800	Enhancers	Fetal Heart	heart
8	chr18:29987200-29987800	Enhancers	Ovary	ovary
9	chr18:29987200-29987800	Enhancers	Psoas Muscle	Psoas
10	chr18:29987400-29990000	Weak transcription	Gastric	stomach
11	chr18:29987400-29999800	Weak transcription	Brain Angular Gyrus	brain
12	chr18:29987600-29987800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr18:29987600-29987800	Enhancers	Brain Anterior Caudate	brain
14	chr18:29987600-29987800	Enhancers	Brain Hippocampus Middle	brain
15	chr18:29987600-29987800	Enhancers	Left Ventricle	heart
16	chr18:29987600-29988000	Weak transcription	Brain Substantia Nigra	brain

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