Variant report

Variant	rs4644922
Chromosome Location	chr18:30030864-30030865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30017894..30019395-chr18:30030644..30032301,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10502591	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10502594	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10502600	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10853420	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11504783	0.80[AMR][1000 genomes]
rs11504784	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11872355	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13381184	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16963314	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16963351	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16963353	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16963360	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16963365	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16963373	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16963382	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17736489	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55730180	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58220828	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59630704	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73954805	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73954806	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73954807	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73958413	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73958418	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73958422	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30020000-30032000	Weak transcription	Gastric	stomach
2	chr18:30022800-30035400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr18:30023400-30033000	Enhancers	Fetal Heart	heart
4	chr18:30024000-30035200	Weak transcription	Fetal Brain Female	brain
5	chr18:30024200-30044800	Weak transcription	Right Ventricle	heart
6	chr18:30025000-30041200	Weak transcription	Left Ventricle	heart
7	chr18:30027000-30032200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr18:30027000-30033600	Weak transcription	Fetal Brain Male	brain
9	chr18:30027200-30034000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr18:30027200-30045400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr18:30027800-30032400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr18:30028400-30031800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr18:30029800-30032800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr18:30029800-30037000	Enhancers	Brain Angular Gyrus	brain
15	chr18:30030000-30031000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr18:30030000-30032200	Weak transcription	Fetal Intestine Large	intestine
17	chr18:30030400-30031600	Enhancers	Brain Hippocampus Middle	brain
18	chr18:30030400-30037400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr18:30030600-30031000	Enhancers	Small Intestine	intestine
20	chr18:30030600-30031200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr18:30030600-30031200	Enhancers	Pancreas	Pancrea
22	chr18:30030600-30031200	Enhancers	Psoas Muscle	Psoas
23	chr18:30030600-30031800	Enhancers	Brain Substantia Nigra	brain
24	chr18:30030600-30031800	Enhancers	Stomach Mucosa	stomach
25	chr18:30030800-30031200	Enhancers	Fetal Muscle Leg	muscle
26	chr18:30030800-30031200	Enhancers	Lung	lung
27	chr18:30030800-30031400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr18:30030800-30032600	Enhancers	Liver	Liver
29	chr18:30030800-30033400	Weak transcription	Brain Anterior Caudate	brain
30	chr18:30030800-30034400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr18:30030800-30034400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr18:30030800-30039200	Weak transcription	Fetal Intestine Small	intestine

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