Variant report

Variant	rs16963373
Chromosome Location	chr18:30023069-30023070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10502591	0.92[EUR][1000 genomes]
rs10502594	0.90[EUR][1000 genomes]
rs10502600	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10853420	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11504783	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11504784	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11872355	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13381184	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16963314	0.90[EUR][1000 genomes]
rs16963351	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16963353	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16963360	0.96[EUR][1000 genomes]
rs16963365	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16963382	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17736489	0.92[EUR][1000 genomes]
rs17744064	0.83[AFR][1000 genomes]
rs4644922	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55730180	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58220828	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59630704	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73954805	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73954806	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73954807	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73958413	0.90[EUR][1000 genomes]
rs73958418	0.90[EUR][1000 genomes]
rs73958422	0.96[EUR][1000 genomes]
rs9807749	0.83[AFR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30019000-30023400	Weak transcription	Right Ventricle	heart
2	chr18:30019000-30024200	Weak transcription	Pancreas	Pancrea
3	chr18:30019000-30028400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr18:30019200-30023400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr18:30020000-30032000	Weak transcription	Gastric	stomach
6	chr18:30020800-30023600	Weak transcription	Fetal Kidney	kidney
7	chr18:30020800-30030600	Weak transcription	Stomach Mucosa	stomach
8	chr18:30021200-30023600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr18:30021600-30023600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr18:30022000-30023400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr18:30022000-30023400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr18:30022000-30023400	Weak transcription	HSMM	muscle
13	chr18:30022000-30023600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr18:30022000-30023600	Weak transcription	Fetal Brain Female	brain
15	chr18:30022000-30024200	Weak transcription	Left Ventricle	heart
16	chr18:30022000-30025000	Enhancers	Brain Angular Gyrus	brain
17	chr18:30022000-30025000	Enhancers	Fetal Lung	lung
18	chr18:30022000-30025600	Enhancers	Brain Hippocampus Middle	brain
19	chr18:30022000-30026000	Weak transcription	Brain Germinal Matrix	brain
20	chr18:30022000-30026400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr18:30022000-30026600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr18:30022000-30029200	Enhancers	Brain Substantia Nigra	brain
23	chr18:30022200-30024600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr18:30022400-30026200	Weak transcription	Liver	Liver
25	chr18:30022600-30024200	Enhancers	HSMMtube	muscle
26	chr18:30022600-30026400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr18:30022600-30027800	Enhancers	Brain Cingulate Gyrus	brain
28	chr18:30022800-30023600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr18:30022800-30023800	Weak transcription	Fetal Brain Male	brain
30	chr18:30022800-30030600	Weak transcription	Psoas Muscle	Psoas
31	chr18:30022800-30035400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr18:30023000-30023400	Weak transcription	Fetal Heart	heart
33	chr18:30023000-30023800	Enhancers	Brain Anterior Caudate	brain
34	chr18:30023000-30025400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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