Variant report

Variant	rs16963382
Chromosome Location	chr18:30032385-30032386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10468834	0.88[CEU][hapmap]
rs10502591	0.87[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes]
rs10502594	0.87[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10502600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10853420	0.87[CEU][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs11081757	1.00[JPT][hapmap]
rs11504784	0.82[EUR][1000 genomes]
rs11662168	0.83[GIH][hapmap]
rs11872355	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs13380968	1.00[CEU][hapmap]
rs13381184	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1350551	0.88[CEU][hapmap];0.87[GIH][hapmap];0.82[TSI][hapmap]
rs16963285	0.86[MEX][hapmap]
rs16963314	0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16963351	0.86[EUR][1000 genomes]
rs16963353	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16963360	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16963365	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16963373	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17736440	1.00[JPT][hapmap]
rs17736489	0.87[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs17811690	0.87[GIH][hapmap]
rs1863605	0.88[CEU][hapmap]
rs4644922	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55730180	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58220828	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59630704	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs729692	0.88[CEU][hapmap]
rs729693	0.88[CEU][hapmap]
rs73954805	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73954806	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73954807	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73958413	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73958418	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73958422	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30022800-30035400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr18:30023400-30033000	Enhancers	Fetal Heart	heart
3	chr18:30024000-30035200	Weak transcription	Fetal Brain Female	brain
4	chr18:30024200-30044800	Weak transcription	Right Ventricle	heart
5	chr18:30025000-30041200	Weak transcription	Left Ventricle	heart
6	chr18:30027000-30033600	Weak transcription	Fetal Brain Male	brain
7	chr18:30027200-30034000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr18:30027200-30045400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr18:30027800-30032400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr18:30029800-30032800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr18:30029800-30037000	Enhancers	Brain Angular Gyrus	brain
12	chr18:30030400-30037400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr18:30030800-30032600	Enhancers	Liver	Liver
14	chr18:30030800-30033400	Weak transcription	Brain Anterior Caudate	brain
15	chr18:30030800-30034400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr18:30030800-30034400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr18:30030800-30039200	Weak transcription	Fetal Intestine Small	intestine
18	chr18:30031000-30034600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr18:30031200-30033400	Weak transcription	Pancreas	Pancrea
20	chr18:30031200-30037400	Weak transcription	Psoas Muscle	Psoas
21	chr18:30031200-30048400	Weak transcription	Fetal Muscle Leg	muscle
22	chr18:30031400-30048200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr18:30031800-30046800	Weak transcription	Stomach Mucosa	stomach
24	chr18:30032000-30032400	Enhancers	Adipose Nuclei	Adipose
25	chr18:30032000-30032600	Enhancers	Brain Hippocampus Middle	brain
26	chr18:30032200-30032800	Enhancers	Fetal Intestine Large	intestine
27	chr18:30032200-30037000	Enhancers	Brain Substantia Nigra	brain

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